Strain Fitness in Pseudomonas putida KT2440 around PP_0504

Experiment: 4-Hydroxyvalerate (C) (40mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0503 and PP_0504 overlap by 13 nucleotidesPP_0504 and PP_0505 are separated by 109 nucleotidesPP_0505 and PP_0506 are separated by 126 nucleotides PP_0503: PP_0503 - Major facilitator family transporter, at 592,263 to 593,468 _0503 PP_0504: PP_0504 - Outer membrane protein OprG, at 593,456 to 594,139 _0504 PP_0505: PP_0505 - conserved protein of unknown function, at 594,249 to 594,761 _0505 PP_0506: PP_0506 - putative ABC efflux transporter, permease protein, at 594,888 to 596,153 _0506 Position (kb) 593 594 595Strain fitness (log2 ratio) -2 -1 0 1 2at 592.555 kb on + strand, within PP_0503at 592.555 kb on + strand, within PP_0503at 592.556 kb on - strand, within PP_0503at 592.556 kb on - strand, within PP_0503at 592.556 kb on - strand, within PP_0503at 592.752 kb on + strand, within PP_0503at 593.090 kb on + strand, within PP_0503at 593.091 kb on - strand, within PP_0503at 593.091 kb on - strand, within PP_0503at 593.277 kb on + strand, within PP_0503at 593.277 kb on + strand, within PP_0503at 593.278 kb on - strand, within PP_0503at 593.278 kb on - strand, within PP_0503at 593.278 kb on - strand, within PP_0503at 593.289 kb on + strand, within PP_0503at 593.289 kb on + strand, within PP_0503at 593.400 kb on + strandat 593.400 kb on + strandat 593.401 kb on - strandat 593.466 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.486 kb on + strandat 593.486 kb on + strandat 593.526 kb on + strand, within PP_0504at 593.526 kb on + strand, within PP_0504at 593.527 kb on - strand, within PP_0504at 593.577 kb on + strand, within PP_0504at 593.578 kb on - strand, within PP_0504at 593.620 kb on - strand, within PP_0504at 593.620 kb on - strand, within PP_0504at 593.620 kb on - strand, within PP_0504at 593.644 kb on + strand, within PP_0504at 593.648 kb on + strand, within PP_0504at 593.649 kb on - strand, within PP_0504at 593.727 kb on + strand, within PP_0504at 593.728 kb on - strand, within PP_0504at 593.728 kb on - strand, within PP_0504at 593.781 kb on + strand, within PP_0504at 593.781 kb on + strand, within PP_0504at 593.884 kb on + strand, within PP_0504at 593.925 kb on + strand, within PP_0504at 593.926 kb on - strand, within PP_0504at 593.926 kb on - strand, within PP_0504at 593.926 kb on - strand, within PP_0504at 593.926 kb on - strandat 594.072 kb on + strandat 594.181 kb on + strandat 594.262 kb on + strandat 594.263 kb on - strandat 594.263 kb on - strandat 594.263 kb on - strandat 594.352 kb on + strand, within PP_0505at 594.361 kb on + strand, within PP_0505at 594.362 kb on - strand, within PP_0505at 594.448 kb on + strand, within PP_0505at 594.448 kb on + strand, within PP_0505at 594.449 kb on - strand, within PP_0505at 594.449 kb on - strand, within PP_0505at 594.449 kb on - strand, within PP_0505at 594.451 kb on + strand, within PP_0505at 594.452 kb on - strandat 594.452 kb on - strand, within PP_0505at 594.452 kb on - strand, within PP_0505at 594.511 kb on + strand, within PP_0505at 594.549 kb on + strand, within PP_0505at 594.550 kb on - strand, within PP_0505at 594.798 kb on + strandat 594.879 kb on + strandat 594.879 kb on + strandat 594.897 kb on + strandat 594.897 kb on + strandat 594.897 kb on + strandat 594.897 kb on + strandat 594.897 kb on + strandat 594.897 kb on + strandat 594.898 kb on - strandat 594.898 kb on - strandat 594.898 kb on - strandat 594.980 kb on + strandat 595.027 kb on + strand, within PP_0506at 595.027 kb on + strand, within PP_0506at 595.028 kb on - strand, within PP_0506at 595.028 kb on - strand, within PP_0506at 595.028 kb on - strand, within PP_0506at 595.028 kb on - strand, within PP_0506at 595.036 kb on + strand, within PP_0506at 595.036 kb on + strand, within PP_0506at 595.037 kb on - strand, within PP_0506at 595.037 kb on - strand, within PP_0506at 595.037 kb on - strand, within PP_0506at 595.037 kb on - strand, within PP_0506at 595.037 kb on - strand, within PP_0506at 595.051 kb on + strand, within PP_0506at 595.051 kb on + strand, within PP_0506at 595.051 kb on + strand, within PP_0506at 595.051 kb on + strand, within PP_0506at 595.051 kb on + strand, within PP_0506at 595.052 kb on - strand, within PP_0506at 595.052 kb on - strand, within PP_0506at 595.052 kb on - strand, within PP_0506at 595.052 kb on - strand, within PP_0506at 595.052 kb on - strand, within PP_0506at 595.052 kb on - strand, within PP_0506at 595.078 kb on + strand, within PP_0506at 595.078 kb on + strand, within PP_0506at 595.078 kb on + strand, within PP_0506at 595.078 kb on + strand, within PP_0506at 595.078 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.080 kb on + strand, within PP_0506at 595.081 kb on - strand, within PP_0506at 595.081 kb on - strand, within PP_0506at 595.081 kb on - strand, within PP_0506at 595.081 kb on - strand, within PP_0506at 595.081 kb on - strand, within PP_0506at 595.081 kb on - strand, within PP_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyvalerate (C) (40mM)
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592,555 + PP_0503 0.24 -1.8
592,555 + PP_0503 0.24 -2.4
592,556 - PP_0503 0.24 +0.1
592,556 - PP_0503 0.24 +0.3
592,556 - PP_0503 0.24 -1.6
592,752 + PP_0503 0.41 +0.0
593,090 + PP_0503 0.69 -1.4
593,091 - PP_0503 0.69 -0.3
593,091 - PP_0503 0.69 -0.2
593,277 + PP_0503 0.84 +0.4
593,277 + PP_0503 0.84 -0.2
593,278 - PP_0503 0.84 -0.9
593,278 - PP_0503 0.84 -0.1
593,278 - PP_0503 0.84 +2.6
593,289 + PP_0503 0.85 -0.3
593,289 + PP_0503 0.85 -0.2
593,400 + -0.6
593,400 + +0.3
593,401 - -0.7
593,466 + -0.4
593,484 + +0.8
593,484 + +0.8
593,484 + -1.7
593,484 + -0.5
593,484 + +0.3
593,484 + +0.9
593,485 - -0.6
593,485 - +0.6
593,485 - -0.3
593,485 - -0.8
593,485 - -0.1
593,485 - -1.0
593,485 - +0.1
593,485 - -0.2
593,486 + -0.0
593,486 + +0.1
593,526 + PP_0504 0.10 -0.0
593,526 + PP_0504 0.10 -0.4
593,527 - PP_0504 0.10 -0.3
593,577 + PP_0504 0.18 -1.1
593,578 - PP_0504 0.18 -0.0
593,620 - PP_0504 0.24 -0.0
593,620 - PP_0504 0.24 +2.2
593,620 - PP_0504 0.24 +0.5
593,644 + PP_0504 0.27 -1.4
593,648 + PP_0504 0.28 -0.0
593,649 - PP_0504 0.28 -1.0
593,727 + PP_0504 0.40 +0.2
593,728 - PP_0504 0.40 +0.1
593,728 - PP_0504 0.40 -0.2
593,781 + PP_0504 0.48 +0.3
593,781 + PP_0504 0.48 -1.0
593,884 + PP_0504 0.63 +0.8
593,925 + PP_0504 0.69 -0.1
593,926 - PP_0504 0.69 +0.6
593,926 - PP_0504 0.69 +0.6
593,926 - PP_0504 0.69 -0.3
593,926 - -1.0
594,072 + +0.2
594,181 + -0.6
594,262 + -0.5
594,263 - -0.4
594,263 - -0.2
594,263 - +0.2
594,352 + PP_0505 0.20 -1.0
594,361 + PP_0505 0.22 -2.1
594,362 - PP_0505 0.22 +1.6
594,448 + PP_0505 0.39 -0.1
594,448 + PP_0505 0.39 +0.6
594,449 - PP_0505 0.39 +0.7
594,449 - PP_0505 0.39 -0.2
594,449 - PP_0505 0.39 +0.1
594,451 + PP_0505 0.39 +0.8
594,452 - +1.6
594,452 - PP_0505 0.40 +0.3
594,452 - PP_0505 0.40 -1.0
594,511 + PP_0505 0.51 +0.1
594,549 + PP_0505 0.58 -2.2
594,550 - PP_0505 0.59 +0.1
594,798 + +0.2
594,879 + +0.6
594,879 + -0.5
594,897 + +1.0
594,897 + +0.7
594,897 + -0.1
594,897 + -1.7
594,897 + -1.7
594,897 + +1.8
594,898 - +1.0
594,898 - +0.1
594,898 - -0.9
594,980 + +0.2
595,027 + PP_0506 0.11 +1.1
595,027 + PP_0506 0.11 -1.4
595,028 - PP_0506 0.11 +0.7
595,028 - PP_0506 0.11 -1.2
595,028 - PP_0506 0.11 +0.1
595,028 - PP_0506 0.11 -0.6
595,036 + PP_0506 0.12 +0.7
595,036 + PP_0506 0.12 -0.1
595,037 - PP_0506 0.12 -1.0
595,037 - PP_0506 0.12 -0.7
595,037 - PP_0506 0.12 +0.4
595,037 - PP_0506 0.12 -0.1
595,037 - PP_0506 0.12 +0.6
595,051 + PP_0506 0.13 -1.1
595,051 + PP_0506 0.13 -1.1
595,051 + PP_0506 0.13 -0.2
595,051 + PP_0506 0.13 +0.5
595,051 + PP_0506 0.13 +1.0
595,052 - PP_0506 0.13 +0.2
595,052 - PP_0506 0.13 +0.9
595,052 - PP_0506 0.13 +1.4
595,052 - PP_0506 0.13 -0.6
595,052 - PP_0506 0.13 +0.5
595,052 - PP_0506 0.13 +0.8
595,078 + PP_0506 0.15 -0.6
595,078 + PP_0506 0.15 +0.0
595,078 + PP_0506 0.15 +0.6
595,078 + PP_0506 0.15 +0.1
595,078 + PP_0506 0.15 -1.9
595,080 + PP_0506 0.15 -0.2
595,080 + PP_0506 0.15 +0.4
595,080 + PP_0506 0.15 -0.4
595,080 + PP_0506 0.15 -0.3
595,080 + PP_0506 0.15 -0.6
595,080 + PP_0506 0.15 +0.2
595,080 + PP_0506 0.15 +0.1
595,081 - PP_0506 0.15 +0.1
595,081 - PP_0506 0.15 +0.5
595,081 - PP_0506 0.15 +0.4
595,081 - PP_0506 0.15 -0.7
595,081 - PP_0506 0.15 +0.2
595,081 - PP_0506 0.15 -0.4

Or see this region's nucleotide sequence