Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF894

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF892 and GFF893 are separated by 0 nucleotidesGFF893 and GFF894 overlap by 4 nucleotidesGFF894 and GFF895 are separated by 60 nucleotides GFF892 - lysosomal glucosyl ceramidase-like protein, at 72,365 to 73,708 GFF892 GFF893 - Inosose isomerase (EC 5.3.99.-), at 73,709 to 74,542 GFF893 GFF894 - FIG01046005: hypothetical protein, at 74,539 to 75,705 GFF894 GFF895 - 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain, at 75,766 to 77,697 GFF895 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 73.592 kb on + strandat 73.592 kb on + strandat 73.592 kb on + strandat 73.592 kb on + strandat 73.640 kb on - strandat 73.678 kb on + strandat 73.679 kb on - strandat 73.687 kb on - strandat 73.799 kb on + strand, within GFF893at 73.819 kb on + strand, within GFF893at 73.820 kb on - strand, within GFF893at 73.820 kb on - strand, within GFF893at 73.846 kb on + strand, within GFF893at 73.852 kb on - strand, within GFF893at 73.888 kb on + strand, within GFF893at 73.889 kb on - strand, within GFF893at 73.902 kb on - strand, within GFF893at 74.194 kb on - strand, within GFF893at 74.418 kb on + strand, within GFF893at 74.433 kb on - strand, within GFF893at 74.532 kb on + strandat 74.541 kb on - strandat 74.541 kb on - strandat 74.618 kb on + strandat 74.647 kb on + strandat 74.833 kb on + strand, within GFF894at 74.860 kb on + strand, within GFF894at 75.114 kb on + strand, within GFF894at 75.132 kb on - strand, within GFF894at 75.270 kb on + strand, within GFF894at 75.271 kb on - strand, within GFF894at 75.450 kb on - strand, within GFF894at 75.465 kb on + strand, within GFF894at 75.597 kb on - strandat 75.635 kb on + strandat 75.862 kb on + strandat 75.986 kb on - strand, within GFF895at 75.991 kb on + strand, within GFF895at 75.991 kb on + strand, within GFF895at 75.991 kb on + strand, within GFF895at 75.991 kb on + strand, within GFF895at 75.992 kb on - strand, within GFF895at 75.992 kb on - strand, within GFF895at 75.992 kb on - strand, within GFF895at 76.013 kb on + strand, within GFF895at 76.024 kb on - strand, within GFF895at 76.058 kb on - strand, within GFF895at 76.125 kb on - strand, within GFF895at 76.128 kb on - strand, within GFF895at 76.268 kb on + strand, within GFF895at 76.269 kb on - strand, within GFF895at 76.453 kb on - strand, within GFF895at 76.498 kb on + strand, within GFF895at 76.505 kb on - strand, within GFF895

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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73,592 + -1.2
73,592 + +2.1
73,592 + +0.7
73,592 + +2.2
73,640 - -1.0
73,678 + +1.1
73,679 - +1.0
73,687 - +2.0
73,799 + GFF893 0.11 -0.3
73,819 + GFF893 0.13 +0.3
73,820 - GFF893 0.13 -2.1
73,820 - GFF893 0.13 -0.0
73,846 + GFF893 0.16 +0.2
73,852 - GFF893 0.17 -1.0
73,888 + GFF893 0.21 +0.7
73,889 - GFF893 0.22 +0.9
73,902 - GFF893 0.23 +2.0
74,194 - GFF893 0.58 -2.1
74,418 + GFF893 0.85 -1.0
74,433 - GFF893 0.87 +0.4
74,532 + -0.6
74,541 - +1.3
74,541 - +0.3
74,618 + -0.3
74,647 + +2.4
74,833 + GFF894 0.25 +1.4
74,860 + GFF894 0.28 -1.5
75,114 + GFF894 0.49 +1.1
75,132 - GFF894 0.51 +1.1
75,270 + GFF894 0.63 +0.2
75,271 - GFF894 0.63 -0.5
75,450 - GFF894 0.78 -0.6
75,465 + GFF894 0.79 +0.4
75,597 - -2.6
75,635 + -1.3
75,862 + +0.9
75,986 - GFF895 0.11 +0.8
75,991 + GFF895 0.12 -0.8
75,991 + GFF895 0.12 +2.1
75,991 + GFF895 0.12 +0.3
75,991 + GFF895 0.12 -1.4
75,992 - GFF895 0.12 -2.3
75,992 - GFF895 0.12 -2.6
75,992 - GFF895 0.12 +1.0
76,013 + GFF895 0.13 +1.1
76,024 - GFF895 0.13 +0.2
76,058 - GFF895 0.15 +0.4
76,125 - GFF895 0.19 +0.5
76,128 - GFF895 0.19 +1.3
76,268 + GFF895 0.26 -0.3
76,269 - GFF895 0.26 +1.1
76,453 - GFF895 0.36 +1.6
76,498 + GFF895 0.38 -2.1
76,505 - GFF895 0.38 -0.4

Or see this region's nucleotide sequence