Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF804

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF803 and GFF804 are separated by 88 nucleotidesGFF804 and GFF805 overlap by 8 nucleotidesGFF805 and GFF806 are separated by 3 nucleotidesGFF806 and GFF807 overlap by 4 nucleotides GFF803 - Prophage Clp protease-like protein, at 150,438 to 152,513 GFF803 GFF804 - putative RecA/RadA recombinase, at 152,602 to 152,925 GFF804 GFF805 - Phage protein, at 152,918 to 153,193 GFF805 GFF806 - Phage tail completion protein, at 153,197 to 153,781 GFF806 GFF807 - Phage minor tail protein, at 153,778 to 154,179 GFF807 Position (kb) 152 153Strain fitness (log2 ratio) -1 0 1at 151.831 kb on - strand, within GFF803at 151.832 kb on + strand, within GFF803at 151.998 kb on + strand, within GFF803at 152.265 kb on - strand, within GFF803at 152.452 kb on + strandat 152.529 kb on - strandat 152.618 kb on + strandat 152.618 kb on + strandat 152.619 kb on - strandat 152.619 kb on - strandat 153.032 kb on - strand, within GFF805at 153.092 kb on + strand, within GFF805at 153.253 kb on + strandat 153.554 kb on + strand, within GFF806at 153.574 kb on + strand, within GFF806at 153.608 kb on - strand, within GFF806at 153.706 kb on + strand, within GFF806at 153.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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151,831 - GFF803 0.67 +0.4
151,832 + GFF803 0.67 -0.0
151,998 + GFF803 0.75 +0.3
152,265 - GFF803 0.88 -0.4
152,452 + -0.5
152,529 - -0.5
152,618 + +0.6
152,618 + +0.9
152,619 - -1.2
152,619 - +0.3
153,032 - GFF805 0.41 +0.2
153,092 + GFF805 0.63 +0.0
153,253 + -1.4
153,554 + GFF806 0.61 -0.3
153,574 + GFF806 0.64 +1.4
153,608 - GFF806 0.70 +0.8
153,706 + GFF806 0.87 +1.3
153,741 - +0.2

Or see this region's nucleotide sequence