Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF76

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF75 and GFF76 are separated by 410 nucleotidesGFF76 and GFF77 are separated by 160 nucleotidesGFF77 and GFF78 are separated by 36 nucleotides GFF75 - Major fimbrial subunit StfA, at 57,872 to 58,432 GFF75 GFF76 - hypothetical protein, at 58,843 to 58,968 GFF76 GFF77 - FIG01046082: hypothetical protein, at 59,129 to 59,335 GFF77 GFF78 - Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB, at 59,372 to 61,429 GFF78 Position (kb) 58 59Strain fitness (log2 ratio) -2 -1 0 1 2at 57.880 kb on - strandat 58.208 kb on - strand, within GFF75at 59.387 kb on - strandat 59.406 kb on + strandat 59.805 kb on + strand, within GFF78at 59.810 kb on - strand, within GFF78at 59.832 kb on - strand, within GFF78at 59.959 kb on + strand, within GFF78at 59.959 kb on + strand, within GFF78at 59.962 kb on + strand, within GFF78

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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57,880 - +0.6
58,208 - GFF75 0.60 -2.1
59,387 - -0.1
59,406 + +2.7
59,805 + GFF78 0.21 -0.7
59,810 - GFF78 0.21 +0.4
59,832 - GFF78 0.22 -1.4
59,959 + GFF78 0.29 -2.6
59,959 + GFF78 0.29 -0.7
59,962 + GFF78 0.29 +2.3

Or see this region's nucleotide sequence