Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF592

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF591 and GFF592 are separated by 74 nucleotidesGFF592 and GFF593 overlap by 8 nucleotides GFF591 - Transcriptional regulatory protein RtcR, at 326,628 to 328,211 GFF591 GFF592 - hypothetical protein, at 328,286 to 328,408 GFF592 GFF593 - Putative ribonucleoprotein related-protein, at 328,401 to 329,954 GFF593 Position (kb) 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 327.519 kb on + strand, within GFF591at 327.526 kb on + strand, within GFF591at 327.527 kb on - strand, within GFF591at 327.527 kb on - strand, within GFF591at 327.598 kb on - strand, within GFF591at 327.764 kb on + strand, within GFF591at 327.820 kb on + strand, within GFF591at 327.889 kb on + strand, within GFF591at 327.947 kb on - strand, within GFF591at 328.070 kb on - strandat 328.407 kb on - strandat 328.549 kb on - strandat 328.720 kb on + strand, within GFF593at 328.721 kb on - strand, within GFF593at 328.721 kb on - strand, within GFF593at 328.758 kb on - strand, within GFF593at 328.985 kb on + strand, within GFF593at 329.159 kb on + strand, within GFF593

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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327,519 + GFF591 0.56 -0.7
327,526 + GFF591 0.57 +0.5
327,527 - GFF591 0.57 -0.0
327,527 - GFF591 0.57 -0.4
327,598 - GFF591 0.61 -0.9
327,764 + GFF591 0.72 +1.6
327,820 + GFF591 0.75 +1.2
327,889 + GFF591 0.80 +1.0
327,947 - GFF591 0.83 +0.6
328,070 - -0.1
328,407 - +2.5
328,549 - -0.0
328,720 + GFF593 0.21 -0.5
328,721 - GFF593 0.21 +0.7
328,721 - GFF593 0.21 -1.8
328,758 - GFF593 0.23 -1.5
328,985 + GFF593 0.38 +0.4
329,159 + GFF593 0.49 -0.1

Or see this region's nucleotide sequence