Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4868

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4867 and GFF4868 overlap by 1 nucleotidesGFF4868 and GFF4869 are separated by 272 nucleotides GFF4867 - Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA, at 165,921 to 167,126 GFF4867 GFF4868 - Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE, at 167,126 to 167,569 GFF4868 GFF4869 - FIG00761799: membrane protein, at 167,842 to 168,756 GFF4869 Position (kb) 167 168Strain fitness (log2 ratio) -2 -1 0 1at 166.147 kb on + strand, within GFF4867at 166.256 kb on + strand, within GFF4867at 166.435 kb on + strand, within GFF4867at 166.591 kb on - strand, within GFF4867at 166.963 kb on - strand, within GFF4867at 167.057 kb on + strandat 167.057 kb on + strandat 167.124 kb on + strandat 167.141 kb on + strandat 167.488 kb on - strand, within GFF4868at 167.582 kb on - strandat 168.302 kb on + strand, within GFF4869at 168.351 kb on - strand, within GFF4869at 168.351 kb on - strand, within GFF4869at 168.510 kb on - strand, within GFF4869

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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166,147 + GFF4867 0.19 -0.5
166,256 + GFF4867 0.28 -1.0
166,435 + GFF4867 0.43 -0.1
166,591 - GFF4867 0.56 +0.1
166,963 - GFF4867 0.86 -1.0
167,057 + -0.9
167,057 + -0.0
167,124 + -0.3
167,141 + +0.8
167,488 - GFF4868 0.82 -0.8
167,582 - -1.9
168,302 + GFF4869 0.50 -0.3
168,351 - GFF4869 0.56 -1.4
168,351 - GFF4869 0.56 -0.4
168,510 - GFF4869 0.73 +0.1

Or see this region's nucleotide sequence