Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4833

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4832 and GFF4833 are separated by 82 nucleotidesGFF4833 and GFF4834 are separated by 227 nucleotides GFF4832 - Enolase (EC 4.2.1.11), at 127,330 to 128,628 GFF4832 GFF4833 - CTP synthase (EC 6.3.4.2), at 128,711 to 130,348 GFF4833 GFF4834 - Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8), at 130,576 to 131,376 GFF4834 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.653 kb on - strandat 130.671 kb on + strand, within GFF4834at 130.859 kb on + strand, within GFF4834at 130.860 kb on - strand, within GFF4834at 131.050 kb on - strand, within GFF4834at 131.118 kb on + strand, within GFF4834at 131.247 kb on - strand, within GFF4834at 131.247 kb on - strand, within GFF4834at 131.263 kb on - strand, within GFF4834

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
remove
128,653 - -2.5
130,671 + GFF4834 0.12 -2.4
130,859 + GFF4834 0.35 +0.7
130,860 - GFF4834 0.35 -0.0
131,050 - GFF4834 0.59 -0.2
131,118 + GFF4834 0.68 -0.5
131,247 - GFF4834 0.84 +0.5
131,247 - GFF4834 0.84 -0.1
131,263 - GFF4834 0.86 -0.5

Or see this region's nucleotide sequence