Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4667

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4659 and GFF4660 are separated by 43 nucleotidesGFF4660 and GFF4661 are separated by 46 nucleotidesGFF4661 and GFF4662 are separated by 15 nucleotidesGFF4662 and GFF4663 are separated by 35 nucleotidesGFF4663 and GFF4664 are separated by 35 nucleotidesGFF4664 and GFF4665 are separated by 35 nucleotidesGFF4665 and GFF4666 are separated by 35 nucleotidesGFF4666 and GFF4667 are separated by 23 nucleotidesGFF4667 and GFF4668 are separated by 8 nucleotidesGFF4668 and GFF4582 are separated by 222 nucleotides GFF4659 - tRNA-Gln-CTG, at 368,222 to 368,296 GFF4659 GFF4660 - tRNA-Gln-CTG, at 368,340 to 368,414 GFF4660 GFF4661 - tRNA-Met-CAT, at 368,461 to 368,537 GFF4661 GFF4662 - tRNA-Gln-TTG, at 368,553 to 368,627 GFF4662 GFF4663 - tRNA-Gln-TTG, at 368,663 to 368,737 GFF4663 GFF4664 - tRNA-Gln-TTG, at 368,773 to 368,847 GFF4664 GFF4665 - tRNA-Gln-TTG, at 368,883 to 368,957 GFF4665 GFF4666 - tRNA-Gln-TTG, at 368,993 to 369,067 GFF4666 GFF4667 - tRNA-Leu-TAG, at 369,091 to 369,175 GFF4667 GFF4668 - tRNA-Met-CAT, at 369,184 to 369,260 GFF4668 GFF4582 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 369,483 to 371,147 GFF4582 Position (kb) 369 370Strain fitness (log2 ratio) -1 0 1 2at 368.132 kb on + strandat 368.174 kb on + strandat 368.460 kb on - strandat 369.661 kb on + strand, within GFF4582at 369.661 kb on + strand, within GFF4582at 369.662 kb on - strand, within GFF4582at 369.662 kb on - strand, within GFF4582at 369.688 kb on + strand, within GFF4582at 369.777 kb on + strand, within GFF4582at 369.830 kb on - strand, within GFF4582at 369.997 kb on + strand, within GFF4582at 369.997 kb on + strand, within GFF4582at 369.998 kb on - strand, within GFF4582at 370.001 kb on + strand, within GFF4582at 370.001 kb on + strand, within GFF4582at 370.001 kb on + strand, within GFF4582at 370.002 kb on - strand, within GFF4582at 370.002 kb on - strand, within GFF4582at 370.002 kb on - strand, within GFF4582

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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368,132 + +0.7
368,174 + -0.0
368,460 - -0.5
369,661 + GFF4582 0.11 +0.7
369,661 + GFF4582 0.11 -0.4
369,662 - GFF4582 0.11 -0.1
369,662 - GFF4582 0.11 -0.3
369,688 + GFF4582 0.12 -0.3
369,777 + GFF4582 0.18 -1.3
369,830 - GFF4582 0.21 +2.3
369,997 + GFF4582 0.31 -0.4
369,997 + GFF4582 0.31 +1.0
369,998 - GFF4582 0.31 -0.1
370,001 + GFF4582 0.31 -0.1
370,001 + GFF4582 0.31 +0.8
370,001 + GFF4582 0.31 -0.8
370,002 - GFF4582 0.31 +0.2
370,002 - GFF4582 0.31 -0.6
370,002 - GFF4582 0.31 -1.6

Or see this region's nucleotide sequence