Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4489

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4487 and GFF4488 are separated by 11 nucleotidesGFF4488 and GFF4489 are separated by 45 nucleotidesGFF4489 and GFF4490 overlap by 4 nucleotidesGFF4490 and GFF4491 are separated by 48 nucleotides GFF4487 - FIG00638355: hypothetical protein, at 269,892 to 271,010 GFF4487 GFF4488 - '4'-phosphopantetheinyl transferase (EC 2.7.8.-) [enterobactin] siderophore' transl_table=11, at 271,022 to 271,726 GFF4488 GFF4489 - TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D, at 271,772 to 274,027 GFF4489 GFF4490 - hypothetical protein, at 274,024 to 274,167 GFF4490 GFF4491 - Enterobactin esterase, at 274,216 to 275,430 GFF4491 Position (kb) 271 272 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 270.777 kb on - strand, within GFF4487at 270.840 kb on - strand, within GFF4487at 270.851 kb on + strand, within GFF4487at 270.852 kb on - strand, within GFF4487at 270.922 kb on - strandat 270.928 kb on + strandat 270.974 kb on + strandat 270.975 kb on - strandat 270.975 kb on - strandat 271.043 kb on + strandat 271.043 kb on + strandat 271.044 kb on - strandat 271.044 kb on - strandat 271.045 kb on + strandat 271.099 kb on + strand, within GFF4488at 271.102 kb on + strand, within GFF4488at 271.103 kb on - strand, within GFF4488at 271.108 kb on + strand, within GFF4488at 271.141 kb on + strand, within GFF4488at 271.142 kb on - strand, within GFF4488at 271.182 kb on - strand, within GFF4488at 271.261 kb on + strand, within GFF4488at 271.355 kb on - strand, within GFF4488at 271.544 kb on + strand, within GFF4488at 271.591 kb on - strand, within GFF4488at 271.629 kb on - strand, within GFF4488at 271.786 kb on + strandat 271.786 kb on + strandat 271.787 kb on - strandat 271.796 kb on - strandat 271.797 kb on + strandat 271.797 kb on + strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.821 kb on + strandat 271.821 kb on + strandat 271.822 kb on - strandat 271.822 kb on - strandat 271.846 kb on + strandat 271.848 kb on + strandat 271.849 kb on - strandat 271.918 kb on + strandat 271.981 kb on + strandat 271.982 kb on - strandat 271.987 kb on - strandat 272.040 kb on + strand, within GFF4489at 272.064 kb on + strand, within GFF4489at 272.103 kb on - strand, within GFF4489at 272.189 kb on - strand, within GFF4489at 272.190 kb on + strand, within GFF4489at 272.190 kb on + strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.289 kb on + strand, within GFF4489at 272.289 kb on + strand, within GFF4489at 272.290 kb on - strand, within GFF4489at 272.315 kb on - strand, within GFF4489at 272.348 kb on - strand, within GFF4489at 272.348 kb on - strand, within GFF4489at 272.422 kb on + strand, within GFF4489at 272.432 kb on - strand, within GFF4489at 272.467 kb on - strand, within GFF4489at 272.547 kb on + strand, within GFF4489at 272.653 kb on + strand, within GFF4489at 272.654 kb on - strand, within GFF4489at 272.768 kb on - strand, within GFF4489at 272.830 kb on + strand, within GFF4489at 272.910 kb on - strand, within GFF4489at 273.017 kb on - strand, within GFF4489at 273.025 kb on - strand, within GFF4489at 273.038 kb on - strand, within GFF4489at 273.038 kb on - strand, within GFF4489at 273.124 kb on + strand, within GFF4489at 273.254 kb on - strand, within GFF4489at 273.338 kb on - strand, within GFF4489at 273.520 kb on + strand, within GFF4489at 273.521 kb on - strand, within GFF4489at 273.785 kb on + strand, within GFF4489at 273.987 kb on - strandat 273.999 kb on - strandat 274.030 kb on + strandat 274.031 kb on - strandat 274.031 kb on - strandat 274.372 kb on + strand, within GFF4491at 274.372 kb on + strand, within GFF4491at 274.372 kb on + strand, within GFF4491at 274.490 kb on - strand, within GFF4491at 274.497 kb on + strand, within GFF4491at 274.586 kb on + strand, within GFF4491at 274.587 kb on - strand, within GFF4491at 274.773 kb on - strand, within GFF4491at 274.822 kb on - strand, within GFF4491at 274.938 kb on + strand, within GFF4491

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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270,777 - GFF4487 0.79 -1.5
270,840 - GFF4487 0.85 +2.2
270,851 + GFF4487 0.86 -0.7
270,852 - GFF4487 0.86 -1.6
270,922 - +0.9
270,928 + -0.0
270,974 + +0.4
270,975 - -0.1
270,975 - +0.8
271,043 + +0.7
271,043 + -2.0
271,044 - +0.6
271,044 - +0.0
271,045 + +2.2
271,099 + GFF4488 0.11 +0.1
271,102 + GFF4488 0.11 +0.1
271,103 - GFF4488 0.11 -0.5
271,108 + GFF4488 0.12 +0.9
271,141 + GFF4488 0.17 +0.2
271,142 - GFF4488 0.17 -0.4
271,182 - GFF4488 0.23 +2.4
271,261 + GFF4488 0.34 +0.5
271,355 - GFF4488 0.47 +1.0
271,544 + GFF4488 0.74 +1.1
271,591 - GFF4488 0.81 -0.3
271,629 - GFF4488 0.86 +0.4
271,786 + +0.5
271,786 + -1.1
271,787 - +0.2
271,796 - -1.0
271,797 + -0.9
271,797 + +0.8
271,805 - -0.8
271,805 - -0.1
271,805 - -2.2
271,805 - -0.4
271,805 - -1.6
271,821 + -1.7
271,821 + +0.6
271,822 - -0.2
271,822 - -0.7
271,846 + +1.6
271,848 + -1.6
271,849 - -1.2
271,918 + -0.1
271,981 + -1.0
271,982 - -1.7
271,987 - -1.5
272,040 + GFF4489 0.12 +0.1
272,064 + GFF4489 0.13 +0.3
272,103 - GFF4489 0.15 -1.0
272,189 - GFF4489 0.18 +1.4
272,190 + GFF4489 0.19 +0.3
272,190 + GFF4489 0.19 -0.2
272,191 - GFF4489 0.19 -0.5
272,191 - GFF4489 0.19 -0.7
272,191 - GFF4489 0.19 +0.5
272,191 - GFF4489 0.19 -2.8
272,289 + GFF4489 0.23 +0.2
272,289 + GFF4489 0.23 +0.2
272,290 - GFF4489 0.23 -0.6
272,315 - GFF4489 0.24 -0.1
272,348 - GFF4489 0.26 -0.4
272,348 - GFF4489 0.26 +0.3
272,422 + GFF4489 0.29 -0.5
272,432 - GFF4489 0.29 -0.4
272,467 - GFF4489 0.31 -0.1
272,547 + GFF4489 0.34 -0.7
272,653 + GFF4489 0.39 +0.7
272,654 - GFF4489 0.39 +0.0
272,768 - GFF4489 0.44 +1.9
272,830 + GFF4489 0.47 -2.3
272,910 - GFF4489 0.50 +0.6
273,017 - GFF4489 0.55 +0.4
273,025 - GFF4489 0.56 -1.3
273,038 - GFF4489 0.56 -1.4
273,038 - GFF4489 0.56 -2.1
273,124 + GFF4489 0.60 -1.6
273,254 - GFF4489 0.66 +0.1
273,338 - GFF4489 0.69 -2.2
273,520 + GFF4489 0.77 +1.4
273,521 - GFF4489 0.78 +0.7
273,785 + GFF4489 0.89 -1.6
273,987 - -1.5
273,999 - +0.3
274,030 + -0.1
274,031 - +0.1
274,031 - -1.5
274,372 + GFF4491 0.13 -2.5
274,372 + GFF4491 0.13 -1.3
274,372 + GFF4491 0.13 -0.8
274,490 - GFF4491 0.23 -2.8
274,497 + GFF4491 0.23 -3.7
274,586 + GFF4491 0.30 -0.7
274,587 - GFF4491 0.31 -3.4
274,773 - GFF4491 0.46 -3.9
274,822 - GFF4491 0.50 +0.3
274,938 + GFF4491 0.59 -2.3

Or see this region's nucleotide sequence