Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4213

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4211 and GFF4212 are separated by 317 nucleotidesGFF4212 and GFF4213 are separated by 66 nucleotidesGFF4213 and GFF4214 are separated by 419 nucleotides GFF4211 - DNA-directed RNA polymerase beta subunit (EC 2.7.7.6), at 24,649 to 28,677 GFF4211 GFF4212 - LSU ribosomal protein L7/L12 (P1/P2), at 28,995 to 29,360 GFF4212 GFF4213 - LSU ribosomal protein L10p (P0), at 29,427 to 29,924 GFF4213 GFF4214 - LSU ribosomal protein L1p (L10Ae), at 30,344 to 31,048 GFF4214 Position (kb) 29 30Strain fitness (log2 ratio) -2 -1 0 1at 28.941 kb on - strandat 30.206 kb on - strandat 30.206 kb on - strandat 30.210 kb on - strandat 30.210 kb on - strandat 30.214 kb on - strandat 30.214 kb on - strandat 30.214 kb on - strandat 30.280 kb on - strandat 30.280 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
remove
28,941 - -2.2
30,206 - -2.0
30,206 - -1.5
30,210 - -0.5
30,210 - -0.9
30,214 - +0.6
30,214 - -1.3
30,214 - -1.1
30,280 - -0.1
30,280 - -0.7

Or see this region's nucleotide sequence