Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3891

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3889 and GFF3890 are separated by 3 nucleotidesGFF3890 and GFF3891 are separated by 5 nucleotidesGFF3891 and GFF3892 overlap by 4 nucleotidesGFF3892 and GFF3893 are separated by 4 nucleotides GFF3889 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 168,299 to 169,183 GFF3889 GFF3890 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 169,187 to 169,735 GFF3890 GFF3891 - CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 169,741 to 170,733 GFF3891 GFF3892 - Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33), at 170,730 to 171,503 GFF3892 GFF3893 - Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45), at 171,508 to 172,587 GFF3893 Position (kb) 169 170 171Strain fitness (log2 ratio) -1 0 1at 169.309 kb on + strand, within GFF3890at 169.598 kb on + strand, within GFF3890at 169.648 kb on + strand, within GFF3890at 170.055 kb on - strand, within GFF3891at 170.087 kb on + strand, within GFF3891at 170.442 kb on + strand, within GFF3891at 170.606 kb on + strand, within GFF3891at 171.733 kb on - strand, within GFF3893

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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169,309 + GFF3890 0.22 -1.1
169,598 + GFF3890 0.75 -1.1
169,648 + GFF3890 0.84 -1.4
170,055 - GFF3891 0.32 -0.3
170,087 + GFF3891 0.35 +0.3
170,442 + GFF3891 0.71 -1.5
170,606 + GFF3891 0.87 +0.0
171,733 - GFF3893 0.21 -0.3

Or see this region's nucleotide sequence