Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3859 and GFF3860 are separated by 78 nucleotides GFF3860 and GFF3861 are separated by 75 nucleotides GFF3861 and GFF3862 are separated by 90 nucleotides
GFF3859 - FIG00509877: hypothetical protein, at 133,332 to 136,328
GFF3859
GFF3860 - FIG01045963: hypothetical protein, at 136,407 to 136,577
GFF3860
GFF3861 - Uridine kinase (EC 2.7.1.48) [C1], at 136,653 to 137,294
GFF3861
GFF3862 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 137,385 to 137,966
GFF3862
Position (kb) 136
137 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 135.521 kb on + strand, within GFF3859 at 135.522 kb on - strand, within GFF3859 at 135.689 kb on + strand, within GFF3859 at 135.689 kb on + strand, within GFF3859 at 135.691 kb on + strand, within GFF3859 at 135.691 kb on + strand, within GFF3859 at 135.781 kb on + strand, within GFF3859 at 135.781 kb on + strand, within GFF3859 at 135.799 kb on - strand, within GFF3859 at 135.844 kb on - strand, within GFF3859 at 135.897 kb on + strand, within GFF3859 at 135.979 kb on + strand, within GFF3859 at 136.035 kb on + strand at 136.218 kb on + strand at 136.276 kb on - strand at 136.324 kb on - strand at 136.388 kb on - strand at 136.388 kb on - strand at 136.393 kb on - strand at 136.393 kb on - strand at 136.396 kb on - strand at 136.430 kb on + strand, within GFF3860 at 136.586 kb on + strand at 136.623 kb on + strand at 136.623 kb on + strand at 136.623 kb on + strand at 136.624 kb on - strand at 136.797 kb on + strand, within GFF3861 at 136.800 kb on + strand, within GFF3861 at 136.801 kb on - strand, within GFF3861 at 136.848 kb on + strand, within GFF3861 at 136.849 kb on - strand, within GFF3861 at 136.935 kb on + strand, within GFF3861 at 136.935 kb on + strand, within GFF3861 at 136.936 kb on - strand, within GFF3861 at 136.941 kb on + strand, within GFF3861 at 136.942 kb on - strand, within GFF3861 at 136.997 kb on + strand, within GFF3861 at 137.009 kb on + strand, within GFF3861 at 137.209 kb on - strand, within GFF3861 at 137.217 kb on - strand, within GFF3861 at 137.406 kb on - strand at 137.488 kb on + strand, within GFF3862 at 137.526 kb on - strand, within GFF3862 at 137.555 kb on + strand, within GFF3862
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI remove 135,521 + GFF3859 0.73 -0.1 135,522 - GFF3859 0.73 -0.3 135,689 + GFF3859 0.79 -0.2 135,689 + GFF3859 0.79 +1.3 135,691 + GFF3859 0.79 -0.7 135,691 + GFF3859 0.79 +0.7 135,781 + GFF3859 0.82 +1.5 135,781 + GFF3859 0.82 +0.3 135,799 - GFF3859 0.82 +0.1 135,844 - GFF3859 0.84 -0.2 135,897 + GFF3859 0.86 +0.9 135,979 + GFF3859 0.88 +0.8 136,035 + +2.9 136,218 + -0.2 136,276 - -1.2 136,324 - -0.8 136,388 - -0.2 136,388 - +1.1 136,393 - -0.4 136,393 - -0.3 136,396 - -1.6 136,430 + GFF3860 0.13 +0.0 136,586 + +2.3 136,623 + +0.9 136,623 + +0.0 136,623 + +1.5 136,624 - +1.2 136,797 + GFF3861 0.22 +0.7 136,800 + GFF3861 0.23 +2.1 136,801 - GFF3861 0.23 +1.4 136,848 + GFF3861 0.30 +0.3 136,849 - GFF3861 0.31 +1.4 136,935 + GFF3861 0.44 +0.5 136,935 + GFF3861 0.44 +0.0 136,936 - GFF3861 0.44 +0.9 136,941 + GFF3861 0.45 +0.4 136,942 - GFF3861 0.45 +0.7 136,997 + GFF3861 0.54 +0.4 137,009 + GFF3861 0.55 +1.4 137,209 - GFF3861 0.87 +0.5 137,217 - GFF3861 0.88 -1.5 137,406 - -1.8 137,488 + GFF3862 0.18 -2.7 137,526 - GFF3862 0.24 -1.7 137,555 + GFF3862 0.29 -2.1
Or see this region's nucleotide sequence