Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3844

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3841 and GFF3842 are separated by 132 nucleotidesGFF3842 and GFF3843 are separated by 91 nucleotidesGFF3843 and GFF3844 are separated by 268 nucleotidesGFF3844 and GFF3845 are separated by 35 nucleotides GFF3841 - hypothetical protein, at 110,923 to 111,039 GFF3841 GFF3842 - hypothetical protein, at 111,172 to 111,291 GFF3842 GFF3843 - Putative inner membrane protein, at 111,383 to 111,736 GFF3843 GFF3844 - putative cytoplasmic protein, at 112,005 to 112,274 GFF3844 GFF3845 - putative cytoplasmic protein, at 112,310 to 113,317 GFF3845 Position (kb) 112 113Strain fitness (log2 ratio) -1 0 1at 111.135 kb on - strandat 111.153 kb on - strandat 111.283 kb on - strandat 111.285 kb on - strandat 111.287 kb on - strandat 111.353 kb on - strandat 111.692 kb on + strand, within GFF3843at 112.634 kb on - strand, within GFF3845at 112.754 kb on + strand, within GFF3845at 113.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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111,135 - +0.2
111,153 - +1.5
111,283 - -0.3
111,285 - -0.0
111,287 - -0.4
111,353 - +0.2
111,692 + GFF3843 0.87 +0.8
112,634 - GFF3845 0.32 +0.1
112,754 + GFF3845 0.44 +1.2
113,228 + -0.4

Or see this region's nucleotide sequence