Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3688

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3686 and GFF3687 are separated by 289 nucleotidesGFF3687 and GFF3688 are separated by 88 nucleotidesGFF3688 and GFF3689 overlap by 44 nucleotides GFF3686 - Outer membrane protein F precursor, at 41,381 to 42,472 GFF3686 GFF3687 - hypothetical protein, at 42,762 to 42,914 GFF3687 GFF3688 - Asparaginyl-tRNA synthetase (EC 6.1.1.22), at 43,003 to 43,122 GFF3688 GFF3689 - Asparaginyl-tRNA synthetase (EC 6.1.1.22), at 43,079 to 44,416 GFF3689 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1at 42.031 kb on - strand, within GFF3686at 42.031 kb on - strand, within GFF3686at 42.031 kb on - strand, within GFF3686at 42.090 kb on + strand, within GFF3686at 42.223 kb on + strand, within GFF3686at 42.380 kb on - strandat 42.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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42,031 - GFF3686 0.60 -1.7
42,031 - GFF3686 0.60 -0.7
42,031 - GFF3686 0.60 -1.2
42,090 + GFF3686 0.65 -1.7
42,223 + GFF3686 0.77 -0.5
42,380 - -0.5
42,383 - +0.8

Or see this region's nucleotide sequence