Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3636

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3634 and GFF3635 are separated by 93 nucleotidesGFF3635 and GFF3636 are separated by 58 nucleotidesGFF3636 and GFF3637 are separated by 126 nucleotides GFF3634 - Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-), at 383,160 to 384,281 GFF3634 GFF3635 - Membrane-bound lysozyme inhibitor of c-type lysozyme, at 384,375 to 384,698 GFF3635 GFF3636 - 'Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)' transl_table=11, at 384,757 to 385,413 GFF3636 GFF3637 - Tyrosyl-tRNA synthetase (EC 6.1.1.1), at 385,540 to 386,814 GFF3637 Position (kb) 384 385 386Strain fitness (log2 ratio) -2 -1 0 1 2at 383.901 kb on + strand, within GFF3634at 383.901 kb on + strand, within GFF3634at 383.902 kb on - strand, within GFF3634at 383.902 kb on - strand, within GFF3634at 383.911 kb on + strand, within GFF3634at 383.956 kb on + strand, within GFF3634at 384.098 kb on + strand, within GFF3634at 384.119 kb on + strand, within GFF3634at 384.120 kb on - strand, within GFF3634at 384.143 kb on + strand, within GFF3634at 384.314 kb on + strandat 384.462 kb on - strand, within GFF3635at 384.591 kb on + strand, within GFF3635at 384.594 kb on - strand, within GFF3635at 384.666 kb on - strandat 384.668 kb on + strandat 385.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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383,901 + GFF3634 0.66 -2.0
383,901 + GFF3634 0.66 -0.1
383,902 - GFF3634 0.66 +0.4
383,902 - GFF3634 0.66 -1.0
383,911 + GFF3634 0.67 -0.5
383,956 + GFF3634 0.71 -1.4
384,098 + GFF3634 0.84 -2.0
384,119 + GFF3634 0.85 +0.2
384,120 - GFF3634 0.86 +0.2
384,143 + GFF3634 0.88 -0.4
384,314 + -0.7
384,462 - GFF3635 0.27 -1.1
384,591 + GFF3635 0.67 +0.6
384,594 - GFF3635 0.68 +1.0
384,666 - +0.9
384,668 + -0.0
385,468 + +2.5

Or see this region's nucleotide sequence