Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3571

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3569 and GFF3570 are separated by 58 nucleotidesGFF3570 and GFF3571 are separated by 11 nucleotidesGFF3571 and GFF3572 are separated by 322 nucleotides GFF3569 - Proline iminopeptidase (EC 3.4.11.5), at 325,158 to 326,051 GFF3569 GFF3570 - FIG074102: hypothetical protein, at 326,110 to 326,847 GFF3570 GFF3571 - Ribokinase (EC 2.7.1.15), at 326,859 to 328,085 GFF3571 GFF3572 - Tetrathionate reductase subunit A, at 328,408 to 331,470 GFF3572 Position (kb) 326 327 328 329Strain fitness (log2 ratio) -1 0 1at 326.153 kb on + strandat 326.313 kb on - strand, within GFF3570at 328.331 kb on - strandat 328.332 kb on + strandat 328.412 kb on - strandat 328.413 kb on + strandat 328.413 kb on + strandat 328.778 kb on - strand, within GFF3572at 328.813 kb on - strand, within GFF3572at 329.016 kb on + strand, within GFF3572

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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326,153 + +0.5
326,313 - GFF3570 0.28 -0.6
328,331 - +1.7
328,332 + -0.1
328,412 - +0.6
328,413 + -0.5
328,413 + -1.4
328,778 - GFF3572 0.12 +0.1
328,813 - GFF3572 0.13 -0.4
329,016 + GFF3572 0.20 +0.2

Or see this region's nucleotide sequence