Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3524

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3522 and GFF3523 are separated by 111 nucleotidesGFF3523 and GFF3524 are separated by 95 nucleotidesGFF3524 and GFF3525 are separated by 50 nucleotidesGFF3525 and GFF3526 are separated by 301 nucleotides GFF3522 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 274,255 to 276,183 GFF3522 GFF3523 - Translation initiation factor 3, at 276,295 to 276,729 GFF3523 GFF3524 - LSU ribosomal protein L35p, at 276,825 to 277,022 GFF3524 GFF3525 - LSU ribosomal protein L20p, at 277,073 to 277,429 GFF3525 GFF3526 - Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20), at 277,731 to 278,714 GFF3526 Position (kb) 276 277 278Strain fitness (log2 ratio) -1 0 1 2at 277.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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277,535 + +1.8

Or see this region's nucleotide sequence