Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3267

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3266 and GFF3267 are separated by 547 nucleotidesGFF3267 and GFF3268 are separated by 16 nucleotides GFF3266 - FIG01046201: hypothetical protein, at 38,316 to 39,191 GFF3266 GFF3267 - Invasion gene E protein (Pathogenicity island encoded protein: homologous to ipgE of Shigella), at 39,739 to 40,080 GFF3267 GFF3268 - Inositol phosphate phosphatase sopB (EC 3.1.3.-), at 40,097 to 41,782 GFF3268 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1at 39.253 kb on - strandat 39.852 kb on + strand, within GFF3267at 40.082 kb on + strandat 40.141 kb on + strandat 40.328 kb on - strand, within GFF3268at 40.328 kb on - strand, within GFF3268at 40.651 kb on - strand, within GFF3268at 40.651 kb on - strand, within GFF3268at 40.712 kb on - strand, within GFF3268at 40.712 kb on - strand, within GFF3268

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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39,253 - +0.5
39,852 + GFF3267 0.33 +0.2
40,082 + +0.8
40,141 + +1.5
40,328 - GFF3268 0.14 -3.2
40,328 - GFF3268 0.14 -0.3
40,651 - GFF3268 0.33 -0.1
40,651 - GFF3268 0.33 +0.2
40,712 - GFF3268 0.36 +0.8
40,712 - GFF3268 0.36 +0.9

Or see this region's nucleotide sequence