Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2844

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2843 and GFF2844 are separated by 47 nucleotidesGFF2844 and GFF2845 are separated by 193 nucleotides GFF2843 - Putative transport protein, at 363,910 to 365,283 GFF2843 GFF2844 - Probable protease HtpX (EC 3.4.24.-), at 365,331 to 366,212 GFF2844 GFF2845 - Tail-specific protease precursor (EC 3.4.21.102), at 366,406 to 368,454 GFF2845 Position (kb) 365 366 367Strain fitness (log2 ratio) -1 0 1at 364.351 kb on - strand, within GFF2843at 364.460 kb on + strand, within GFF2843at 364.885 kb on + strand, within GFF2843at 364.995 kb on + strand, within GFF2843at 365.130 kb on - strand, within GFF2843at 365.429 kb on + strand, within GFF2844at 365.468 kb on - strand, within GFF2844at 365.922 kb on - strand, within GFF2844at 366.248 kb on - strandat 366.248 kb on - strandat 366.337 kb on + strandat 366.550 kb on - strandat 366.577 kb on - strandat 367.021 kb on - strand, within GFF2845at 367.065 kb on - strand, within GFF2845

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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364,351 - GFF2843 0.32 +0.9
364,460 + GFF2843 0.40 -0.5
364,885 + GFF2843 0.71 +0.4
364,995 + GFF2843 0.79 +0.4
365,130 - GFF2843 0.89 +1.6
365,429 + GFF2844 0.11 +1.6
365,468 - GFF2844 0.16 +0.2
365,922 - GFF2844 0.67 -0.6
366,248 - -1.4
366,248 - -0.3
366,337 + -0.2
366,550 - -0.9
366,577 - +1.0
367,021 - GFF2845 0.30 -1.0
367,065 - GFF2845 0.32 +0.6

Or see this region's nucleotide sequence