Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2839 and GFF2840 are separated by 70 nucleotides GFF2840 and GFF2841 are separated by 157 nucleotides GFF2841 and GFF2842 are separated by 211 nucleotides GFF2842 and GFF2843 are separated by 175 nucleotides
GFF2839 - FIG00638740: hypothetical protein, at 361,833 to 362,120
GFF2839
GFF2840 - Putative inner membrane protein, at 362,191 to 362,334
GFF2840
GFF2841 - putative exported protein, at 362,492 to 362,731
GFF2841
GFF2842 - Transcriptional regulator KdgR, KDG operon repressor, at 362,943 to 363,734
GFF2842
GFF2843 - Putative transport protein, at 363,910 to 365,283
GFF2843
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 361.993 kb on - strand, within GFF2839 at 362.071 kb on - strand, within GFF2839 at 362.184 kb on - strand at 362.294 kb on - strand, within GFF2840 at 362.411 kb on - strand at 362.411 kb on - strand at 362.412 kb on + strand at 362.450 kb on - strand at 362.468 kb on - strand at 362.578 kb on + strand, within GFF2841 at 362.740 kb on - strand at 362.769 kb on + strand at 362.880 kb on + strand at 362.945 kb on - strand at 362.954 kb on - strand at 363.014 kb on - strand at 363.110 kb on + strand, within GFF2842 at 363.118 kb on - strand, within GFF2842 at 363.118 kb on - strand, within GFF2842 at 363.140 kb on + strand, within GFF2842 at 363.227 kb on + strand, within GFF2842 at 363.230 kb on - strand, within GFF2842 at 363.230 kb on - strand, within GFF2842 at 363.318 kb on - strand, within GFF2842 at 363.357 kb on - strand, within GFF2842 at 363.357 kb on - strand, within GFF2842 at 363.375 kb on - strand, within GFF2842 at 363.375 kb on - strand, within GFF2842 at 363.377 kb on - strand, within GFF2842 at 363.377 kb on - strand, within GFF2842 at 363.737 kb on - strand at 363.905 kb on + strand at 364.069 kb on - strand, within GFF2843 at 364.087 kb on + strand, within GFF2843 at 364.160 kb on - strand, within GFF2843 at 364.161 kb on + strand, within GFF2843 at 364.302 kb on + strand, within GFF2843 at 364.302 kb on + strand, within GFF2843 at 364.351 kb on - strand, within GFF2843 at 364.460 kb on + strand, within GFF2843
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI remove 361,993 - GFF2839 0.56 -0.7 362,071 - GFF2839 0.83 +0.4 362,184 - +0.6 362,294 - GFF2840 0.72 -1.2 362,411 - -1.1 362,411 - +0.4 362,412 + -2.9 362,450 - +0.1 362,468 - +1.5 362,578 + GFF2841 0.36 +2.5 362,740 - +0.9 362,769 + +0.6 362,880 + +0.0 362,945 - -0.8 362,954 - -0.5 363,014 - -0.6 363,110 + GFF2842 0.21 +1.6 363,118 - GFF2842 0.22 -0.3 363,118 - GFF2842 0.22 -0.8 363,140 + GFF2842 0.25 +0.6 363,227 + GFF2842 0.36 +0.4 363,230 - GFF2842 0.36 -1.7 363,230 - GFF2842 0.36 -0.6 363,318 - GFF2842 0.47 -2.6 363,357 - GFF2842 0.52 -1.7 363,357 - GFF2842 0.52 +0.2 363,375 - GFF2842 0.55 -0.5 363,375 - GFF2842 0.55 -0.3 363,377 - GFF2842 0.55 -0.2 363,377 - GFF2842 0.55 -0.7 363,737 - -0.1 363,905 + +0.1 364,069 - GFF2843 0.12 -0.2 364,087 + GFF2843 0.13 -2.8 364,160 - GFF2843 0.18 +0.1 364,161 + GFF2843 0.18 -2.3 364,302 + GFF2843 0.29 +0.2 364,302 + GFF2843 0.29 -0.1 364,351 - GFF2843 0.32 +0.9 364,460 + GFF2843 0.40 -0.5
Or see this region's nucleotide sequence