Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2770

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2769 and GFF2770 are separated by 53 nucleotidesGFF2770 and GFF2771 are separated by 37 nucleotidesGFF2771 and GFF2772 are separated by 3 nucleotides GFF2769 - Calcium/proton antiporter, at 294,522 to 295,622 GFF2769 GFF2770 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 295,676 to 296,530 GFF2770 GFF2771 - FIG002708: Protein SirB1, at 296,568 to 297,377 GFF2771 GFF2772 - FIG002082: Protein SirB2, at 297,381 to 297,758 GFF2772 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 294.736 kb on - strand, within GFF2769at 294.751 kb on + strand, within GFF2769at 294.827 kb on + strand, within GFF2769at 294.828 kb on - strand, within GFF2769at 295.112 kb on + strand, within GFF2769at 295.117 kb on - strand, within GFF2769at 295.463 kb on + strand, within GFF2769at 295.463 kb on + strand, within GFF2769at 295.501 kb on + strand, within GFF2769at 296.665 kb on - strand, within GFF2771at 296.731 kb on + strand, within GFF2771at 296.898 kb on - strand, within GFF2771at 296.900 kb on + strand, within GFF2771at 296.901 kb on - strand, within GFF2771at 297.063 kb on + strand, within GFF2771at 297.428 kb on - strand, within GFF2772at 297.428 kb on - strand, within GFF2772at 297.503 kb on + strand, within GFF2772at 297.504 kb on - strand, within GFF2772

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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294,736 - GFF2769 0.19 +0.4
294,751 + GFF2769 0.21 +0.3
294,827 + GFF2769 0.28 +0.4
294,828 - GFF2769 0.28 -1.2
295,112 + GFF2769 0.54 +0.6
295,117 - GFF2769 0.54 -0.4
295,463 + GFF2769 0.85 -2.3
295,463 + GFF2769 0.85 -0.7
295,501 + GFF2769 0.89 -1.5
296,665 - GFF2771 0.12 +0.9
296,731 + GFF2771 0.20 +6.4
296,898 - GFF2771 0.41 -0.1
296,900 + GFF2771 0.41 +5.8
296,901 - GFF2771 0.41 -1.9
297,063 + GFF2771 0.61 +5.2
297,428 - GFF2772 0.12 +0.1
297,428 - GFF2772 0.12 +0.5
297,503 + GFF2772 0.32 +5.8
297,504 - GFF2772 0.33 +0.1

Or see this region's nucleotide sequence