Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2752

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2751 and GFF2752 are separated by 131 nucleotidesGFF2752 and GFF2753 are separated by 202 nucleotides GFF2751 - DNA-binding protein H-NS, at 272,901 to 273,314 GFF2751 GFF2752 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 273,446 to 274,354 GFF2752 GFF2753 - Hnr protein, at 274,557 to 275,570 GFF2753 Position (kb) 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 272.482 kb on + strandat 272.638 kb on + strandat 272.816 kb on + strandat 273.538 kb on + strand, within GFF2752at 273.703 kb on - strand, within GFF2752at 274.042 kb on + strand, within GFF2752at 274.479 kb on + strandat 274.485 kb on + strandat 274.503 kb on + strandat 274.713 kb on + strand, within GFF2753at 274.769 kb on - strand, within GFF2753at 274.849 kb on - strand, within GFF2753at 275.051 kb on + strand, within GFF2753at 275.080 kb on - strand, within GFF2753at 275.192 kb on + strand, within GFF2753at 275.192 kb on + strand, within GFF2753at 275.192 kb on + strand, within GFF2753at 275.193 kb on - strand, within GFF2753at 275.348 kb on + strand, within GFF2753at 275.348 kb on + strand, within GFF2753at 275.353 kb on - strand, within GFF2753

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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272,482 + -1.1
272,638 + -3.3
272,816 + -4.0
273,538 + GFF2752 0.10 +6.2
273,703 - GFF2752 0.28 +4.9
274,042 + GFF2752 0.66 +4.1
274,479 + +0.6
274,485 + +2.6
274,503 + +1.2
274,713 + GFF2753 0.15 +4.2
274,769 - GFF2753 0.21 +4.0
274,849 - GFF2753 0.29 +3.7
275,051 + GFF2753 0.49 +4.8
275,080 - GFF2753 0.52 +1.6
275,192 + GFF2753 0.63 +4.4
275,192 + GFF2753 0.63 +2.7
275,192 + GFF2753 0.63 +4.7
275,193 - GFF2753 0.63 +4.4
275,348 + GFF2753 0.78 +4.4
275,348 + GFF2753 0.78 +4.6
275,353 - GFF2753 0.79 +3.9

Or see this region's nucleotide sequence