Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2713

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2712 and GFF2713 overlap by 45 nucleotidesGFF2713 and GFF2714 are separated by 290 nucleotides GFF2712 - Cys regulon transcriptional activator CysB, at 234,025 to 234,999 GFF2712 GFF2713 - FIG01045176: hypothetical protein, at 234,955 to 235,119 GFF2713 GFF2714 - DNA topoisomerase I (EC 5.99.1.2), at 235,410 to 238,007 GFF2714 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 233.955 kb on - strandat 234.003 kb on - strandat 234.044 kb on - strandat 234.625 kb on - strand, within GFF2712at 235.111 kb on + strandat 235.124 kb on + strandat 235.146 kb on + strandat 235.345 kb on - strandat 235.411 kb on + strandat 235.826 kb on - strand, within GFF2714

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
remove
233,955 - +0.7
234,003 - +0.5
234,044 - -0.4
234,625 - GFF2712 0.62 -1.8
235,111 + -0.7
235,124 + -0.2
235,146 + -0.8
235,345 - +1.1
235,411 + -0.9
235,826 - GFF2714 0.16 -0.1

Or see this region's nucleotide sequence