Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2500

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2498 and GFF2499 are separated by 344 nucleotidesGFF2499 and GFF2500 are separated by 119 nucleotidesGFF2500 and GFF2501 are separated by 426 nucleotides GFF2498 - Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5), at 15,304 to 17,346 GFF2498 GFF2499 - Conidiation-specific protein 10, at 17,691 to 17,873 GFF2499 GFF2500 - C-terminal domain of CinA paralog, YdeJ, at 17,993 to 18,520 GFF2500 GFF2501 - FIG00638667: hypothetical protein, at 18,947 to 19,339 GFF2501 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1at 17.003 kb on + strand, within GFF2498at 17.138 kb on - strand, within GFF2498at 17.143 kb on + strandat 18.287 kb on + strand, within GFF2500at 18.331 kb on - strand, within GFF2500at 18.331 kb on - strand, within GFF2500at 18.753 kb on + strandat 18.765 kb on + strandat 19.067 kb on + strand, within GFF2501at 19.396 kb on - strandat 19.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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17,003 + GFF2498 0.83 -0.4
17,138 - GFF2498 0.90 -0.3
17,143 + -0.9
18,287 + GFF2500 0.56 +0.9
18,331 - GFF2500 0.64 -1.0
18,331 - GFF2500 0.64 +0.0
18,753 + +0.5
18,765 + +0.5
19,067 + GFF2501 0.31 +1.4
19,396 - -0.3
19,447 - -0.3

Or see this region's nucleotide sequence