Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2482 and GFF2483 are separated by 98 nucleotides
GFF2482 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 35 to 2,470
GFF2482
GFF2483 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 2,569 to 5,007
GFF2483
Position (kb) 0
1
2
3 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.381 kb on + strand, within GFF2482 at 0.381 kb on + strand, within GFF2482 at 0.454 kb on - strand, within GFF2482 at 0.529 kb on - strand, within GFF2482 at 0.748 kb on - strand, within GFF2482 at 0.748 kb on - strand, within GFF2482 at 0.749 kb on + strand, within GFF2482 at 0.749 kb on + strand, within GFF2482 at 0.750 kb on - strand, within GFF2482 at 0.854 kb on - strand, within GFF2482 at 0.927 kb on + strand, within GFF2482 at 0.928 kb on - strand, within GFF2482 at 0.979 kb on + strand, within GFF2482 at 1.040 kb on - strand, within GFF2482 at 1.042 kb on + strand, within GFF2482 at 1.193 kb on - strand, within GFF2482 at 1.275 kb on - strand, within GFF2482 at 1.442 kb on - strand, within GFF2482 at 1.481 kb on - strand, within GFF2482 at 1.483 kb on - strand, within GFF2482 at 1.671 kb on + strand, within GFF2482 at 1.728 kb on + strand, within GFF2482 at 1.731 kb on + strand, within GFF2482 at 1.731 kb on + strand, within GFF2482 at 1.731 kb on + strand, within GFF2482 at 1.732 kb on - strand, within GFF2482 at 1.732 kb on - strand, within GFF2482 at 1.807 kb on + strand, within GFF2482 at 1.843 kb on + strand, within GFF2482 at 1.878 kb on + strand, within GFF2482 at 1.948 kb on + strand, within GFF2482 at 1.949 kb on - strand, within GFF2482 at 1.985 kb on + strand, within GFF2482 at 2.063 kb on - strand, within GFF2482 at 2.063 kb on - strand, within GFF2482 at 2.171 kb on + strand, within GFF2482 at 2.172 kb on - strand, within GFF2482 at 2.207 kb on - strand, within GFF2482 at 2.225 kb on + strand, within GFF2482 at 2.226 kb on - strand, within GFF2482 at 2.282 kb on - strand at 2.598 kb on + strand at 2.698 kb on - strand at 2.698 kb on - strand at 2.914 kb on - strand, within GFF2483 at 2.979 kb on + strand, within GFF2483 at 2.985 kb on + strand, within GFF2483 at 2.988 kb on - strand, within GFF2483 at 3.075 kb on + strand, within GFF2483 at 3.164 kb on + strand, within GFF2483 at 3.164 kb on + strand, within GFF2483 at 3.327 kb on - strand, within GFF2483 at 3.461 kb on + strand, within GFF2483
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI remove 381 + GFF2482 0.14 +0.1 381 + GFF2482 0.14 -2.3 454 - GFF2482 0.17 -0.8 529 - GFF2482 0.20 +0.2 748 - GFF2482 0.29 +0.2 748 - GFF2482 0.29 +0.6 749 + GFF2482 0.29 -0.0 749 + GFF2482 0.29 -0.4 750 - GFF2482 0.29 +1.3 854 - GFF2482 0.34 +0.3 927 + GFF2482 0.37 +0.9 928 - GFF2482 0.37 +0.6 979 + GFF2482 0.39 -0.9 1,040 - GFF2482 0.41 +0.6 1,042 + GFF2482 0.41 +0.2 1,193 - GFF2482 0.48 -0.4 1,275 - GFF2482 0.51 -1.6 1,442 - GFF2482 0.58 +2.1 1,481 - GFF2482 0.59 +1.1 1,483 - GFF2482 0.59 +0.5 1,671 + GFF2482 0.67 +0.1 1,728 + GFF2482 0.69 -1.7 1,731 + GFF2482 0.70 +1.4 1,731 + GFF2482 0.70 +0.0 1,731 + GFF2482 0.70 +0.8 1,732 - GFF2482 0.70 -0.3 1,732 - GFF2482 0.70 +0.6 1,807 + GFF2482 0.73 +0.3 1,843 + GFF2482 0.74 -1.0 1,878 + GFF2482 0.76 -2.2 1,948 + GFF2482 0.79 -0.1 1,949 - GFF2482 0.79 -0.3 1,985 + GFF2482 0.80 -0.1 2,063 - GFF2482 0.83 +1.1 2,063 - GFF2482 0.83 +2.1 2,171 + GFF2482 0.88 -0.1 2,172 - GFF2482 0.88 -0.5 2,207 - GFF2482 0.89 +0.6 2,225 + GFF2482 0.90 +0.3 2,226 - GFF2482 0.90 +0.3 2,282 - -0.7 2,598 + +1.2 2,698 - +1.0 2,698 - +0.2 2,914 - GFF2483 0.14 -1.3 2,979 + GFF2483 0.17 -0.6 2,985 + GFF2483 0.17 -0.2 2,988 - GFF2483 0.17 -0.7 3,075 + GFF2483 0.21 -0.2 3,164 + GFF2483 0.24 -3.3 3,164 + GFF2483 0.24 +0.5 3,327 - GFF2483 0.31 -1.0 3,461 + GFF2483 0.37 +1.4
Or see this region's nucleotide sequence