Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2042

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2041 and GFF2042 are separated by 71 nucleotidesGFF2042 and GFF2043 are separated by 129 nucleotides GFF2041 - DNA ligase (EC 6.5.1.2), at 7,020 to 9,035 GFF2041 GFF2042 - Cell division protein ZipA, at 9,107 to 10,093 GFF2042 GFF2043 - Sulfate transporter, CysZ-type, at 10,223 to 11,086 GFF2043 Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.036 kb on - strandat 10.272 kb on + strandat 10.313 kb on + strand, within GFF2043at 10.324 kb on + strand, within GFF2043at 10.367 kb on + strand, within GFF2043at 10.368 kb on - strand, within GFF2043at 10.420 kb on + strand, within GFF2043at 10.498 kb on - strand, within GFF2043at 10.544 kb on + strand, within GFF2043at 10.545 kb on - strand, within GFF2043at 10.545 kb on - strand, within GFF2043at 10.545 kb on - strand, within GFF2043at 10.691 kb on - strand, within GFF2043at 10.720 kb on - strand, within GFF2043at 10.775 kb on - strand, within GFF2043at 10.982 kb on - strand, within GFF2043at 10.999 kb on + strand, within GFF2043at 10.999 kb on + strand, within GFF2043at 10.999 kb on + strand, within GFF2043at 11.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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9,036 - +0.2
10,272 + -0.1
10,313 + GFF2043 0.10 -0.5
10,324 + GFF2043 0.12 -1.9
10,367 + GFF2043 0.17 -0.3
10,368 - GFF2043 0.17 +0.2
10,420 + GFF2043 0.23 +0.7
10,498 - GFF2043 0.32 -1.1
10,544 + GFF2043 0.37 +1.4
10,545 - GFF2043 0.37 +0.7
10,545 - GFF2043 0.37 +2.2
10,545 - GFF2043 0.37 -0.9
10,691 - GFF2043 0.54 -0.1
10,720 - GFF2043 0.58 -3.3
10,775 - GFF2043 0.64 +0.2
10,982 - GFF2043 0.88 -0.1
10,999 + GFF2043 0.90 -0.5
10,999 + GFF2043 0.90 -1.2
10,999 + GFF2043 0.90 -0.4
11,011 + +1.7

Or see this region's nucleotide sequence