Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1931

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1928 and GFF1929 are separated by 46 nucleotidesGFF1929 and GFF1930 are separated by 108 nucleotidesGFF1930 and GFF1931 overlap by 11 nucleotidesGFF1931 and GFF1932 are separated by 67 nucleotides GFF1928 - Colicin V production protein, at 122,281 to 122,769 GFF1928 GFF1929 - FIG01045889: hypothetical protein, at 122,816 to 122,971 GFF1929 GFF1930 - DedD protein, at 123,080 to 123,754 GFF1930 GFF1931 - Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17), at 123,744 to 125,012 GFF1931 GFF1932 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 125,080 to 125,994 GFF1932 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 122.769 kb on + strandat 122.770 kb on - strandat 123.092 kb on - strandat 123.094 kb on - strandat 123.228 kb on + strand, within GFF1930at 123.312 kb on + strand, within GFF1930at 125.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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122,769 + -0.8
122,770 - -0.0
123,092 - +0.8
123,094 - -2.0
123,228 + GFF1930 0.22 +0.5
123,312 + GFF1930 0.34 +0.2
125,018 - -0.8

Or see this region's nucleotide sequence