Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1839

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1838 and GFF1839 are separated by 112 nucleotidesGFF1839 and GFF1840 overlap by 1 nucleotidesGFF1840 and GFF1841 are separated by 1 nucleotides GFF1838 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 27,793 to 30,078 GFF1838 GFF1839 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 30,191 to 31,321 GFF1839 GFF1840 - Ferredoxin, at 31,321 to 31,575 GFF1840 GFF1841 - Putative permease, at 31,577 to 32,767 GFF1841 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 30.099 kb on + strandat 31.638 kb on + strandat 31.638 kb on + strandat 31.656 kb on - strandat 31.688 kb on - strandat 31.724 kb on - strand, within GFF1841at 31.954 kb on - strand, within GFF1841at 31.970 kb on - strand, within GFF1841at 32.001 kb on - strand, within GFF1841at 32.071 kb on - strand, within GFF1841

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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30,099 + +0.2
31,638 + -1.0
31,638 + +0.7
31,656 - +0.9
31,688 - +1.6
31,724 - GFF1841 0.12 +0.3
31,954 - GFF1841 0.32 -0.7
31,970 - GFF1841 0.33 -2.0
32,001 - GFF1841 0.36 +0.2
32,071 - GFF1841 0.41 -0.3

Or see this region's nucleotide sequence