Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1780 and GFF1781 are separated by 9 nucleotides GFF1781 and GFF1782 overlap by 1 nucleotides GFF1782 and GFF1783 are separated by 135 nucleotides
GFF1780 - Putative ABC transporter periplasmic binding protein, at 2,553 to 3,455
GFF1780
GFF1781 - Putative binding-protein-dependent transport system, at 3,465 to 4,112
GFF1781
GFF1782 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 4,112 to 5,260
GFF1782
GFF1783 - FIG00509904: hypothetical protein, at 5,396 to 6,685
GFF1783
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.153 kb on + strand, within GFF1780 at 3.153 kb on + strand, within GFF1780 at 3.475 kb on + strand at 3.476 kb on - strand at 3.480 kb on + strand at 3.480 kb on + strand at 3.481 kb on - strand at 3.483 kb on - strand at 3.483 kb on - strand at 3.677 kb on - strand, within GFF1781 at 3.774 kb on - strand, within GFF1781 at 3.791 kb on + strand, within GFF1781 at 3.791 kb on + strand, within GFF1781 at 4.257 kb on + strand, within GFF1782 at 4.354 kb on + strand, within GFF1782 at 4.355 kb on - strand, within GFF1782 at 4.555 kb on + strand, within GFF1782 at 4.667 kb on - strand, within GFF1782 at 5.105 kb on - strand, within GFF1782 at 5.131 kb on + strand, within GFF1782 at 5.259 kb on - strand at 5.259 kb on - strand at 5.259 kb on - strand at 5.295 kb on + strand at 5.306 kb on + strand at 5.314 kb on - strand at 5.316 kb on + strand at 5.317 kb on - strand at 5.317 kb on - strand at 5.328 kb on - strand at 5.363 kb on + strand at 5.364 kb on - strand at 5.685 kb on - strand, within GFF1783 at 5.687 kb on - strand, within GFF1783 at 5.687 kb on - strand, within GFF1783 at 5.868 kb on + strand, within GFF1783 at 6.027 kb on + strand, within GFF1783 at 6.028 kb on - strand, within GFF1783 at 6.054 kb on - strand, within GFF1783 at 6.054 kb on - strand, within GFF1783 at 6.180 kb on + strand, within GFF1783 at 6.181 kb on - strand, within GFF1783 at 6.181 kb on - strand, within GFF1783
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI remove 3,153 + GFF1780 0.66 +0.9 3,153 + GFF1780 0.66 -0.6 3,475 + +1.4 3,476 - +0.5 3,480 + -0.2 3,480 + +0.2 3,481 - -0.6 3,483 - -0.6 3,483 - +0.8 3,677 - GFF1781 0.33 -2.4 3,774 - GFF1781 0.48 +0.2 3,791 + GFF1781 0.50 -1.0 3,791 + GFF1781 0.50 +0.0 4,257 + GFF1782 0.13 -0.2 4,354 + GFF1782 0.21 -1.3 4,355 - GFF1782 0.21 -0.7 4,555 + GFF1782 0.39 -1.9 4,667 - GFF1782 0.48 -0.2 5,105 - GFF1782 0.86 +0.3 5,131 + GFF1782 0.89 +0.0 5,259 - +0.1 5,259 - -0.2 5,259 - +2.1 5,295 + +0.6 5,306 + -1.4 5,314 - +0.5 5,316 + +0.1 5,317 - -1.9 5,317 - +0.0 5,328 - +0.1 5,363 + -0.2 5,364 - -0.1 5,685 - GFF1783 0.22 +0.6 5,687 - GFF1783 0.23 -2.6 5,687 - GFF1783 0.23 -1.2 5,868 + GFF1783 0.37 +0.8 6,027 + GFF1783 0.49 +0.9 6,028 - GFF1783 0.49 +0.0 6,054 - GFF1783 0.51 +0.3 6,054 - GFF1783 0.51 +2.0 6,180 + GFF1783 0.61 -0.6 6,181 - GFF1783 0.61 -1.3 6,181 - GFF1783 0.61 -1.2
Or see this region's nucleotide sequence