Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1492

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1492 and GFF1493 are separated by 393 nucleotidesGFF1493 and GFF1494 are separated by 195 nucleotides GFF1492 - Nitrate/nitrite response regulator protein, at 99 to 746 GFF1492 GFF1493 - hypothetical protein, at 1,140 to 1,286 GFF1493 GFF1494 - Putative outer membrane protein, at 1,482 to 2,039 GFF1494 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2 3at 0.101 kb on - strandat 0.271 kb on - strand, within GFF1492at 0.293 kb on + strand, within GFF1492at 0.544 kb on - strand, within GFF1492at 0.544 kb on - strand, within GFF1492at 0.563 kb on + strand, within GFF1492at 0.716 kb on + strandat 0.717 kb on - strandat 0.752 kb on - strandat 0.886 kb on - strandat 1.004 kb on - strandat 1.294 kb on + strandat 1.299 kb on + strandat 1.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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101 - -0.5
271 - GFF1492 0.27 +0.4
293 + GFF1492 0.30 +1.6
544 - GFF1492 0.69 +0.4
544 - GFF1492 0.69 +0.5
563 + GFF1492 0.72 +0.8
716 + +0.6
717 - -0.6
752 - -0.9
886 - -1.3
1,004 - +2.1
1,294 + +3.3
1,299 + -0.9
1,370 - -0.5

Or see this region's nucleotide sequence