Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1125

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1123 and GFF1124 are separated by 252 nucleotidesGFF1124 and GFF1125 are separated by 58 nucleotidesGFF1125 and GFF1126 are separated by 8 nucleotides GFF1123 - SSU ribosomal protein S20p, at 313,064 to 313,249 GFF1123 GFF1124 - FIG01045144: hypothetical protein, at 313,502 to 313,648 GFF1124 GFF1125 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 313,707 to 314,594 GFF1125 GFF1126 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 314,603 to 317,473 GFF1126 Position (kb) 313 314 315Strain fitness (log2 ratio) -1 0 1 2 3 4at 313.418 kb on + strandat 313.419 kb on - strandat 313.490 kb on + strandat 313.518 kb on + strand, within GFF1124at 313.614 kb on + strand, within GFF1124at 313.622 kb on - strand, within GFF1124at 313.622 kb on - strand, within GFF1124at 313.622 kb on - strand, within GFF1124at 313.623 kb on + strand, within GFF1124at 313.623 kb on + strand, within GFF1124

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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313,418 + -0.0
313,419 - +0.0
313,490 + +0.2
313,518 + GFF1124 0.11 -0.2
313,614 + GFF1124 0.76 -0.1
313,622 - GFF1124 0.82 +4.1
313,622 - GFF1124 0.82 +3.5
313,622 - GFF1124 0.82 +3.5
313,623 + GFF1124 0.82 -1.1
313,623 + GFF1124 0.82 -1.6

Or see this region's nucleotide sequence