Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2978

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2977 and EX28DRAFT_2978 are separated by 230 nucleotidesEX28DRAFT_2978 and EX28DRAFT_2979 are separated by 446 nucleotidesEX28DRAFT_2979 and EX28DRAFT_2980 are separated by 138 nucleotides EX28DRAFT_2977: EX28DRAFT_2977 - agmatinase, at 288,789 to 289,709 _2977 EX28DRAFT_2978: EX28DRAFT_2978 - arginine decarboxylase (EC 4.1.1.19), at 289,940 to 291,916 _2978 EX28DRAFT_2979: EX28DRAFT_2979 - Protein of unknown function (DUF2684), at 292,363 to 292,581 _2979 EX28DRAFT_2980: EX28DRAFT_2980 - methionine adenosyltransferase (EC 2.5.1.6), at 292,720 to 293,874 _2980 Position (kb) 289 290 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 288.941 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.034 kb on - strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.044 kb on - strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.286 kb on + strand, within EX28DRAFT_2977at 289.651 kb on - strandat 289.672 kb on - strandat 289.698 kb on + strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.739 kb on - strandat 289.739 kb on - strandat 289.739 kb on - strandat 289.739 kb on - strandat 289.744 kb on + strandat 289.801 kb on + strandat 289.824 kb on - strandat 289.855 kb on + strandat 289.855 kb on + strandat 289.856 kb on - strandat 289.858 kb on - strandat 289.858 kb on - strandat 289.858 kb on - strandat 289.956 kb on + strandat 289.956 kb on + strandat 289.963 kb on - strandat 290.082 kb on + strandat 290.083 kb on - strandat 290.083 kb on - strandat 290.476 kb on + strand, within EX28DRAFT_2978at 290.597 kb on - strand, within EX28DRAFT_2978at 290.613 kb on + strand, within EX28DRAFT_2978at 290.903 kb on - strand, within EX28DRAFT_2978at 290.967 kb on + strand, within EX28DRAFT_2978at 291.036 kb on + strand, within EX28DRAFT_2978at 291.037 kb on - strand, within EX28DRAFT_2978at 291.381 kb on + strand, within EX28DRAFT_2978at 291.381 kb on + strand, within EX28DRAFT_2978at 291.394 kb on + strand, within EX28DRAFT_2978at 291.403 kb on + strand, within EX28DRAFT_2978at 291.569 kb on - strand, within EX28DRAFT_2978at 291.569 kb on - strand, within EX28DRAFT_2978at 291.570 kb on + strand, within EX28DRAFT_2978at 291.595 kb on + strand, within EX28DRAFT_2978at 291.608 kb on - strand, within EX28DRAFT_2978at 291.610 kb on + strand, within EX28DRAFT_2978at 291.610 kb on + strand, within EX28DRAFT_2978at 291.611 kb on - strand, within EX28DRAFT_2978at 291.771 kb on + strandat 291.774 kb on + strandat 291.774 kb on + strandat 291.778 kb on + strandat 291.778 kb on + strandat 291.796 kb on + strandat 291.796 kb on + strandat 291.796 kb on + strandat 291.797 kb on - strandat 291.802 kb on - strandat 291.853 kb on + strandat 291.853 kb on + strandat 291.854 kb on - strandat 291.861 kb on - strandat 291.861 kb on - strandat 291.863 kb on + strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.936 kb on + strandat 291.939 kb on + strandat 291.939 kb on + strandat 291.958 kb on + strandat 292.018 kb on - strandat 292.050 kb on + strandat 292.087 kb on - strandat 292.123 kb on + strandat 292.198 kb on + strandat 292.224 kb on + strandat 292.415 kb on - strand, within EX28DRAFT_2979at 292.467 kb on - strand, within EX28DRAFT_2979at 292.533 kb on - strand, within EX28DRAFT_2979at 292.599 kb on + strandat 292.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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288,941 + EX28DRAFT_2977 0.17 -0.2
289,033 + EX28DRAFT_2977 0.26 +1.3
289,033 + EX28DRAFT_2977 0.26 +0.1
289,033 + EX28DRAFT_2977 0.26 +0.3
289,034 - EX28DRAFT_2977 0.27 -1.3
289,043 + EX28DRAFT_2977 0.28 +0.0
289,043 + EX28DRAFT_2977 0.28 -0.4
289,043 + EX28DRAFT_2977 0.28 +1.1
289,044 - EX28DRAFT_2977 0.28 +0.8
289,214 + EX28DRAFT_2977 0.46 -0.1
289,214 + EX28DRAFT_2977 0.46 +0.4
289,214 + EX28DRAFT_2977 0.46 +0.1
289,214 + EX28DRAFT_2977 0.46 -0.6
289,214 + EX28DRAFT_2977 0.46 -0.2
289,215 - EX28DRAFT_2977 0.46 +1.9
289,215 - EX28DRAFT_2977 0.46 -1.9
289,215 - EX28DRAFT_2977 0.46 +0.9
289,215 - EX28DRAFT_2977 0.46 +0.1
289,215 - EX28DRAFT_2977 0.46 +0.5
289,286 + EX28DRAFT_2977 0.54 +0.0
289,651 - +0.3
289,672 - +0.1
289,698 + +0.4
289,699 - -2.3
289,699 - -0.2
289,699 - +0.3
289,699 - +0.2
289,699 - +0.1
289,739 - +1.6
289,739 - +0.5
289,739 - +0.3
289,739 - +0.2
289,744 + +1.3
289,801 + +0.1
289,824 - -1.3
289,855 + +1.1
289,855 + -0.1
289,856 - -0.1
289,858 - +0.5
289,858 - +0.4
289,858 - +0.5
289,956 + +0.6
289,956 + -0.5
289,963 - +0.4
290,082 + +0.6
290,083 - +0.1
290,083 - +0.4
290,476 + EX28DRAFT_2978 0.27 +0.2
290,597 - EX28DRAFT_2978 0.33 +0.2
290,613 + EX28DRAFT_2978 0.34 +1.1
290,903 - EX28DRAFT_2978 0.49 +0.7
290,967 + EX28DRAFT_2978 0.52 +0.6
291,036 + EX28DRAFT_2978 0.55 +0.8
291,037 - EX28DRAFT_2978 0.55 +0.4
291,381 + EX28DRAFT_2978 0.73 +1.1
291,381 + EX28DRAFT_2978 0.73 -1.3
291,394 + EX28DRAFT_2978 0.74 +0.7
291,403 + EX28DRAFT_2978 0.74 -0.3
291,569 - EX28DRAFT_2978 0.82 +0.1
291,569 - EX28DRAFT_2978 0.82 +0.3
291,570 + EX28DRAFT_2978 0.82 +0.9
291,595 + EX28DRAFT_2978 0.84 +0.2
291,608 - EX28DRAFT_2978 0.84 +0.8
291,610 + EX28DRAFT_2978 0.84 +0.3
291,610 + EX28DRAFT_2978 0.84 +0.2
291,611 - EX28DRAFT_2978 0.85 -0.1
291,771 + +0.2
291,774 + -0.2
291,774 + +2.3
291,778 + -0.7
291,778 + +0.2
291,796 + -0.4
291,796 + -0.2
291,796 + +0.5
291,797 - +0.5
291,802 - -0.2
291,853 + +0.4
291,853 + -0.7
291,854 - +0.6
291,861 - -0.3
291,861 - +0.0
291,863 + -0.7
291,864 - +0.3
291,864 - -0.3
291,864 - -0.0
291,936 + -0.5
291,939 + +0.3
291,939 + +0.4
291,958 + +0.3
292,018 - +0.5
292,050 + -0.0
292,087 - -0.5
292,123 + -0.8
292,198 + +0.1
292,224 + -1.2
292,415 - EX28DRAFT_2979 0.24 +0.2
292,467 - EX28DRAFT_2979 0.47 -0.3
292,533 - EX28DRAFT_2979 0.78 +0.2
292,599 + +0.7
292,601 + +0.1

Or see this region's nucleotide sequence