Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2904

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2903 and EX28DRAFT_2904 are separated by 193 nucleotidesEX28DRAFT_2904 and EX28DRAFT_2905 are separated by 12 nucleotides EX28DRAFT_2903: EX28DRAFT_2903 - prolipoprotein diacylglyceryl transferase, at 212,894 to 213,769 _2903 EX28DRAFT_2904: EX28DRAFT_2904 - phosphoenolpyruvate-protein phosphotransferase, at 213,963 to 216,209 _2904 EX28DRAFT_2905: EX28DRAFT_2905 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 216,222 to 216,752 _2905 Position (kb) 213 214 215 216 217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 213.791 kb on - strandat 213.862 kb on - strandat 213.897 kb on + strandat 213.898 kb on - strandat 213.909 kb on - strandat 213.911 kb on - strandat 213.918 kb on + strandat 214.094 kb on + strandat 214.094 kb on + strandat 214.095 kb on - strandat 214.095 kb on - strandat 214.108 kb on + strandat 214.108 kb on + strandat 214.109 kb on - strandat 214.109 kb on - strandat 214.215 kb on + strand, within EX28DRAFT_2904at 214.228 kb on + strand, within EX28DRAFT_2904at 214.291 kb on + strand, within EX28DRAFT_2904at 214.291 kb on + strand, within EX28DRAFT_2904at 214.334 kb on + strand, within EX28DRAFT_2904at 214.334 kb on + strand, within EX28DRAFT_2904at 214.334 kb on + strand, within EX28DRAFT_2904at 214.335 kb on - strand, within EX28DRAFT_2904at 214.335 kb on - strand, within EX28DRAFT_2904at 214.336 kb on + strand, within EX28DRAFT_2904at 214.336 kb on + strand, within EX28DRAFT_2904at 214.336 kb on + strand, within EX28DRAFT_2904at 214.337 kb on - strand, within EX28DRAFT_2904at 214.337 kb on - strand, within EX28DRAFT_2904at 214.367 kb on + strand, within EX28DRAFT_2904at 214.400 kb on + strand, within EX28DRAFT_2904at 214.545 kb on + strand, within EX28DRAFT_2904at 214.546 kb on - strand, within EX28DRAFT_2904at 214.679 kb on + strand, within EX28DRAFT_2904at 214.681 kb on + strand, within EX28DRAFT_2904at 214.681 kb on + strand, within EX28DRAFT_2904at 214.681 kb on + strand, within EX28DRAFT_2904at 214.682 kb on - strand, within EX28DRAFT_2904at 214.682 kb on - strand, within EX28DRAFT_2904at 214.682 kb on - strand, within EX28DRAFT_2904at 214.682 kb on - strand, within EX28DRAFT_2904at 214.763 kb on - strand, within EX28DRAFT_2904at 214.828 kb on + strand, within EX28DRAFT_2904at 214.922 kb on + strand, within EX28DRAFT_2904at 214.922 kb on + strand, within EX28DRAFT_2904at 214.965 kb on + strand, within EX28DRAFT_2904at 214.966 kb on - strand, within EX28DRAFT_2904at 214.996 kb on + strand, within EX28DRAFT_2904at 215.056 kb on - strand, within EX28DRAFT_2904at 215.132 kb on + strand, within EX28DRAFT_2904at 215.276 kb on + strand, within EX28DRAFT_2904at 215.533 kb on + strand, within EX28DRAFT_2904at 215.814 kb on + strand, within EX28DRAFT_2904at 215.815 kb on - strand, within EX28DRAFT_2904at 215.815 kb on - strand, within EX28DRAFT_2904at 215.815 kb on - strand, within EX28DRAFT_2904at 215.917 kb on + strand, within EX28DRAFT_2904at 215.917 kb on + strand, within EX28DRAFT_2904at 215.918 kb on - strand, within EX28DRAFT_2904at 215.921 kb on + strand, within EX28DRAFT_2904at 215.990 kb on + strandat 215.991 kb on - strandat 216.058 kb on + strandat 216.059 kb on - strandat 216.061 kb on + strandat 216.061 kb on + strandat 216.062 kb on - strandat 216.088 kb on + strandat 216.141 kb on - strandat 216.187 kb on - strandat 216.218 kb on + strandat 216.219 kb on - strandat 216.224 kb on - strandat 216.234 kb on - strandat 216.776 kb on - strandat 216.777 kb on + strandat 216.778 kb on - strandat 216.779 kb on + strandat 216.780 kb on - strandat 216.780 kb on - strandat 216.780 kb on - strandat 216.780 kb on - strandat 216.825 kb on + strandat 216.825 kb on + strandat 216.840 kb on + strandat 216.866 kb on - strandat 216.930 kb on + strandat 216.930 kb on + strandat 216.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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213,791 - -0.0
213,862 - -0.4
213,897 + -0.1
213,898 - +1.1
213,909 - +0.3
213,911 - +0.4
213,918 + -0.3
214,094 + +0.3
214,094 + +0.4
214,095 - -0.1
214,095 - +0.6
214,108 + +0.4
214,108 + +0.2
214,109 - -0.2
214,109 - +0.0
214,215 + EX28DRAFT_2904 0.11 -0.6
214,228 + EX28DRAFT_2904 0.12 -0.1
214,291 + EX28DRAFT_2904 0.15 -0.1
214,291 + EX28DRAFT_2904 0.15 +0.2
214,334 + EX28DRAFT_2904 0.17 +0.3
214,334 + EX28DRAFT_2904 0.17 +1.1
214,334 + EX28DRAFT_2904 0.17 +0.7
214,335 - EX28DRAFT_2904 0.17 +0.2
214,335 - EX28DRAFT_2904 0.17 +0.5
214,336 + EX28DRAFT_2904 0.17 +0.1
214,336 + EX28DRAFT_2904 0.17 -0.6
214,336 + EX28DRAFT_2904 0.17 +0.8
214,337 - EX28DRAFT_2904 0.17 +0.5
214,337 - EX28DRAFT_2904 0.17 +0.7
214,367 + EX28DRAFT_2904 0.18 +1.4
214,400 + EX28DRAFT_2904 0.19 +0.7
214,545 + EX28DRAFT_2904 0.26 +1.0
214,546 - EX28DRAFT_2904 0.26 +0.8
214,679 + EX28DRAFT_2904 0.32 +0.2
214,681 + EX28DRAFT_2904 0.32 -0.5
214,681 + EX28DRAFT_2904 0.32 +0.7
214,681 + EX28DRAFT_2904 0.32 -0.3
214,682 - EX28DRAFT_2904 0.32 +0.4
214,682 - EX28DRAFT_2904 0.32 +0.2
214,682 - EX28DRAFT_2904 0.32 -0.1
214,682 - EX28DRAFT_2904 0.32 -0.2
214,763 - EX28DRAFT_2904 0.36 -0.6
214,828 + EX28DRAFT_2904 0.38 +0.2
214,922 + EX28DRAFT_2904 0.43 +0.6
214,922 + EX28DRAFT_2904 0.43 +0.1
214,965 + EX28DRAFT_2904 0.45 -0.3
214,966 - EX28DRAFT_2904 0.45 +0.1
214,996 + EX28DRAFT_2904 0.46 +0.3
215,056 - EX28DRAFT_2904 0.49 +0.5
215,132 + EX28DRAFT_2904 0.52 +0.3
215,276 + EX28DRAFT_2904 0.58 -1.3
215,533 + EX28DRAFT_2904 0.70 +0.6
215,814 + EX28DRAFT_2904 0.82 -0.2
215,815 - EX28DRAFT_2904 0.82 -1.3
215,815 - EX28DRAFT_2904 0.82 +0.6
215,815 - EX28DRAFT_2904 0.82 -0.5
215,917 + EX28DRAFT_2904 0.87 +0.3
215,917 + EX28DRAFT_2904 0.87 +0.3
215,918 - EX28DRAFT_2904 0.87 +0.4
215,921 + EX28DRAFT_2904 0.87 -0.1
215,990 + +0.0
215,991 - +0.5
216,058 + +1.5
216,059 - -3.9
216,061 + -0.6
216,061 + -0.0
216,062 - +0.2
216,088 + +0.6
216,141 - +0.7
216,187 - +0.1
216,218 + +0.0
216,219 - -0.1
216,224 - +0.4
216,234 - -0.2
216,776 - -0.2
216,777 + -1.9
216,778 - +0.4
216,779 + -0.9
216,780 - -0.3
216,780 - +0.3
216,780 - -0.1
216,780 - -0.6
216,825 + -0.1
216,825 + +0.1
216,840 + +0.2
216,866 - -3.6
216,930 + +1.0
216,930 + +0.1
216,931 - -0.3

Or see this region's nucleotide sequence