Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2154 and EX28DRAFT_2155 are separated by 9 nucleotides EX28DRAFT_2155 and EX28DRAFT_2156 overlap by 4 nucleotides EX28DRAFT_2156 and EX28DRAFT_2157 are separated by 11 nucleotides EX28DRAFT_2157 and EX28DRAFT_2158 are separated by 23 nucleotides EX28DRAFT_2158 and EX28DRAFT_2159 are separated by 36 nucleotides
EX28DRAFT_2154: EX28DRAFT_2154 - P pilus assembly protein, pilin FimA, at 2,178,915 to 2,179,442
_2154
EX28DRAFT_2155: EX28DRAFT_2155 - P pilus assembly protein, pilin FimA, at 2,179,452 to 2,179,934
_2155
EX28DRAFT_2156: EX28DRAFT_2156 - P pilus assembly protein, pilin FimA, at 2,179,931 to 2,180,422
_2156
EX28DRAFT_2157: EX28DRAFT_2157 - P pilus assembly protein, pilin FimA, at 2,180,434 to 2,181,015
_2157
EX28DRAFT_2158: EX28DRAFT_2158 - P pilus assembly protein, chaperone PapD, at 2,181,039 to 2,181,800
_2158
EX28DRAFT_2159: EX28DRAFT_2159 - P pilus assembly protein, porin PapC, at 2,181,837 to 2,184,353
_2159
Position (kb)
2180
2181
2182 Strain fitness (log2 ratio)
-1
0
1
2 at 2179.508 kb on + strand, within EX28DRAFT_2155 at 2179.540 kb on - strand, within EX28DRAFT_2155 at 2179.634 kb on + strand, within EX28DRAFT_2155 at 2179.656 kb on - strand, within EX28DRAFT_2155 at 2179.679 kb on + strand, within EX28DRAFT_2155 at 2179.680 kb on - strand, within EX28DRAFT_2155 at 2179.711 kb on + strand, within EX28DRAFT_2155 at 2179.735 kb on + strand, within EX28DRAFT_2155 at 2179.752 kb on - strand, within EX28DRAFT_2155 at 2179.752 kb on - strand, within EX28DRAFT_2155 at 2179.752 kb on - strand, within EX28DRAFT_2155 at 2179.753 kb on + strand, within EX28DRAFT_2155 at 2179.754 kb on - strand, within EX28DRAFT_2155 at 2179.754 kb on - strand, within EX28DRAFT_2155 at 2179.761 kb on - strand, within EX28DRAFT_2155 at 2179.865 kb on + strand, within EX28DRAFT_2155 at 2179.865 kb on + strand, within EX28DRAFT_2155 at 2179.865 kb on + strand, within EX28DRAFT_2155 at 2179.866 kb on - strand, within EX28DRAFT_2155 at 2179.866 kb on - strand, within EX28DRAFT_2155 at 2179.912 kb on + strand at 2179.917 kb on + strand at 2179.918 kb on - strand at 2180.041 kb on + strand, within EX28DRAFT_2156 at 2180.042 kb on - strand, within EX28DRAFT_2156 at 2180.099 kb on - strand, within EX28DRAFT_2156 at 2180.102 kb on + strand, within EX28DRAFT_2156 at 2180.102 kb on + strand, within EX28DRAFT_2156 at 2180.103 kb on - strand, within EX28DRAFT_2156 at 2180.103 kb on - strand, within EX28DRAFT_2156 at 2180.103 kb on - strand, within EX28DRAFT_2156 at 2180.218 kb on + strand, within EX28DRAFT_2156 at 2180.218 kb on + strand, within EX28DRAFT_2156 at 2180.284 kb on + strand, within EX28DRAFT_2156 at 2180.285 kb on - strand, within EX28DRAFT_2156 at 2180.333 kb on + strand, within EX28DRAFT_2156 at 2180.334 kb on - strand, within EX28DRAFT_2156 at 2180.334 kb on - strand, within EX28DRAFT_2156 at 2180.351 kb on - strand, within EX28DRAFT_2156 at 2180.436 kb on - strand at 2180.442 kb on - strand at 2180.442 kb on - strand at 2180.442 kb on - strand at 2180.458 kb on - strand at 2180.554 kb on - strand, within EX28DRAFT_2157 at 2180.685 kb on + strand, within EX28DRAFT_2157 at 2180.685 kb on + strand, within EX28DRAFT_2157 at 2180.685 kb on + strand, within EX28DRAFT_2157 at 2180.685 kb on + strand, within EX28DRAFT_2157 at 2180.686 kb on - strand, within EX28DRAFT_2157 at 2180.686 kb on - strand, within EX28DRAFT_2157 at 2180.772 kb on - strand, within EX28DRAFT_2157 at 2180.772 kb on - strand, within EX28DRAFT_2157 at 2180.775 kb on + strand, within EX28DRAFT_2157 at 2180.776 kb on - strand, within EX28DRAFT_2157 at 2180.776 kb on - strand, within EX28DRAFT_2157 at 2180.912 kb on - strand, within EX28DRAFT_2157 at 2180.912 kb on - strand, within EX28DRAFT_2157 at 2180.927 kb on - strand, within EX28DRAFT_2157 at 2181.029 kb on + strand at 2181.030 kb on - strand at 2181.124 kb on + strand, within EX28DRAFT_2158 at 2181.124 kb on + strand, within EX28DRAFT_2158 at 2181.125 kb on - strand, within EX28DRAFT_2158 at 2181.179 kb on + strand, within EX28DRAFT_2158 at 2181.179 kb on + strand, within EX28DRAFT_2158 at 2181.179 kb on + strand, within EX28DRAFT_2158 at 2181.185 kb on + strand, within EX28DRAFT_2158 at 2181.236 kb on + strand, within EX28DRAFT_2158 at 2181.237 kb on - strand, within EX28DRAFT_2158 at 2181.237 kb on - strand, within EX28DRAFT_2158 at 2181.286 kb on + strand, within EX28DRAFT_2158 at 2181.286 kb on + strand, within EX28DRAFT_2158 at 2181.286 kb on + strand, within EX28DRAFT_2158 at 2181.286 kb on + strand, within EX28DRAFT_2158 at 2181.305 kb on + strand, within EX28DRAFT_2158 at 2181.306 kb on - strand, within EX28DRAFT_2158 at 2181.647 kb on + strand, within EX28DRAFT_2158 at 2181.802 kb on + strand at 2181.803 kb on - strand at 2181.803 kb on - strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.968 kb on - strand at 2181.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,179,508 + EX28DRAFT_2155 0.12 -0.5 2,179,540 - EX28DRAFT_2155 0.18 -0.4 2,179,634 + EX28DRAFT_2155 0.38 -0.2 2,179,656 - EX28DRAFT_2155 0.42 +2.6 2,179,679 + EX28DRAFT_2155 0.47 +0.3 2,179,680 - EX28DRAFT_2155 0.47 -1.1 2,179,711 + EX28DRAFT_2155 0.54 -0.0 2,179,735 + EX28DRAFT_2155 0.59 -0.0 2,179,752 - EX28DRAFT_2155 0.62 +0.6 2,179,752 - EX28DRAFT_2155 0.62 +1.2 2,179,752 - EX28DRAFT_2155 0.62 +0.2 2,179,753 + EX28DRAFT_2155 0.62 +0.0 2,179,754 - EX28DRAFT_2155 0.63 -0.3 2,179,754 - EX28DRAFT_2155 0.63 -0.2 2,179,761 - EX28DRAFT_2155 0.64 +0.9 2,179,865 + EX28DRAFT_2155 0.86 -0.6 2,179,865 + EX28DRAFT_2155 0.86 +0.1 2,179,865 + EX28DRAFT_2155 0.86 -0.5 2,179,866 - EX28DRAFT_2155 0.86 -0.1 2,179,866 - EX28DRAFT_2155 0.86 -1.6 2,179,912 + -0.5 2,179,917 + -0.2 2,179,918 - -1.2 2,180,041 + EX28DRAFT_2156 0.22 +0.7 2,180,042 - EX28DRAFT_2156 0.23 +0.4 2,180,099 - EX28DRAFT_2156 0.34 -1.2 2,180,102 + EX28DRAFT_2156 0.35 -1.2 2,180,102 + EX28DRAFT_2156 0.35 +0.4 2,180,103 - EX28DRAFT_2156 0.35 +0.5 2,180,103 - EX28DRAFT_2156 0.35 -0.3 2,180,103 - EX28DRAFT_2156 0.35 +0.3 2,180,218 + EX28DRAFT_2156 0.58 +0.4 2,180,218 + EX28DRAFT_2156 0.58 -1.2 2,180,284 + EX28DRAFT_2156 0.72 +1.0 2,180,285 - EX28DRAFT_2156 0.72 +0.8 2,180,333 + EX28DRAFT_2156 0.82 +0.4 2,180,334 - EX28DRAFT_2156 0.82 +0.2 2,180,334 - EX28DRAFT_2156 0.82 +0.2 2,180,351 - EX28DRAFT_2156 0.85 +1.0 2,180,436 - -0.3 2,180,442 - -0.1 2,180,442 - -0.3 2,180,442 - -0.2 2,180,458 - +0.0 2,180,554 - EX28DRAFT_2157 0.21 -0.1 2,180,685 + EX28DRAFT_2157 0.43 +0.5 2,180,685 + EX28DRAFT_2157 0.43 -0.1 2,180,685 + EX28DRAFT_2157 0.43 -0.9 2,180,685 + EX28DRAFT_2157 0.43 -0.6 2,180,686 - EX28DRAFT_2157 0.43 -0.5 2,180,686 - EX28DRAFT_2157 0.43 +2.0 2,180,772 - EX28DRAFT_2157 0.58 -0.9 2,180,772 - EX28DRAFT_2157 0.58 -1.2 2,180,775 + EX28DRAFT_2157 0.59 -0.8 2,180,776 - EX28DRAFT_2157 0.59 -0.3 2,180,776 - EX28DRAFT_2157 0.59 -1.0 2,180,912 - EX28DRAFT_2157 0.82 +0.3 2,180,912 - EX28DRAFT_2157 0.82 +0.2 2,180,927 - EX28DRAFT_2157 0.85 +0.0 2,181,029 + -0.1 2,181,030 - -0.2 2,181,124 + EX28DRAFT_2158 0.11 -0.4 2,181,124 + EX28DRAFT_2158 0.11 +0.3 2,181,125 - EX28DRAFT_2158 0.11 +0.6 2,181,179 + EX28DRAFT_2158 0.18 +0.4 2,181,179 + EX28DRAFT_2158 0.18 +0.3 2,181,179 + EX28DRAFT_2158 0.18 -1.0 2,181,185 + EX28DRAFT_2158 0.19 -0.0 2,181,236 + EX28DRAFT_2158 0.26 +0.5 2,181,237 - EX28DRAFT_2158 0.26 +0.3 2,181,237 - EX28DRAFT_2158 0.26 +1.0 2,181,286 + EX28DRAFT_2158 0.32 -0.6 2,181,286 + EX28DRAFT_2158 0.32 +0.5 2,181,286 + EX28DRAFT_2158 0.32 +0.1 2,181,286 + EX28DRAFT_2158 0.32 -0.8 2,181,305 + EX28DRAFT_2158 0.35 +0.8 2,181,306 - EX28DRAFT_2158 0.35 +0.4 2,181,647 + EX28DRAFT_2158 0.80 +0.4 2,181,802 + +0.5 2,181,803 - +1.2 2,181,803 - -0.1 2,181,967 + -0.1 2,181,967 + -0.2 2,181,968 - +0.1 2,181,968 - +0.5
Or see this region's nucleotide sequence