Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2073 and EX28DRAFT_2074 overlap by 8 nucleotides EX28DRAFT_2074 and EX28DRAFT_2075 overlap by 8 nucleotides EX28DRAFT_2075 and EX28DRAFT_2076 overlap by 1 nucleotides EX28DRAFT_2076 and EX28DRAFT_2077 are separated by 2 nucleotides
EX28DRAFT_2073: EX28DRAFT_2073 - type II secretion system protein J, at 2,099,280 to 2,099,960
_2073
EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336
_2074
EX28DRAFT_2075: EX28DRAFT_2075 - type II secretion system protein H, at 2,100,329 to 2,100,814
_2075
EX28DRAFT_2076: EX28DRAFT_2076 - type II secretion system protein G, at 2,100,814 to 2,101,263
_2076
EX28DRAFT_2077: EX28DRAFT_2077 - type II secretion system protein F, at 2,101,266 to 2,102,474
_2077
Position (kb)
2100
2101
2102 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2099.916 kb on - strand at 2099.916 kb on - strand at 2099.916 kb on - strand at 2100.031 kb on + strand, within EX28DRAFT_2074 at 2100.076 kb on - strand, within EX28DRAFT_2074 at 2100.330 kb on + strand at 2100.555 kb on - strand, within EX28DRAFT_2075 at 2100.703 kb on + strand, within EX28DRAFT_2075 at 2100.762 kb on - strand, within EX28DRAFT_2075 at 2100.861 kb on + strand, within EX28DRAFT_2076 at 2100.864 kb on + strand, within EX28DRAFT_2076 at 2101.077 kb on - strand, within EX28DRAFT_2076 at 2101.077 kb on - strand, within EX28DRAFT_2076 at 2101.197 kb on + strand, within EX28DRAFT_2076 at 2101.277 kb on + strand at 2101.277 kb on + strand at 2101.284 kb on - strand at 2101.340 kb on + strand at 2101.341 kb on - strand at 2101.345 kb on - strand at 2101.347 kb on + strand at 2101.347 kb on + strand at 2101.382 kb on + strand at 2101.383 kb on - strand at 2101.474 kb on + strand, within EX28DRAFT_2077 at 2101.577 kb on - strand, within EX28DRAFT_2077 at 2101.606 kb on + strand, within EX28DRAFT_2077 at 2101.606 kb on + strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.647 kb on - strand, within EX28DRAFT_2077 at 2101.656 kb on - strand, within EX28DRAFT_2077 at 2101.663 kb on + strand, within EX28DRAFT_2077 at 2101.664 kb on - strand, within EX28DRAFT_2077 at 2101.664 kb on - strand, within EX28DRAFT_2077 at 2101.664 kb on - strand, within EX28DRAFT_2077 at 2101.729 kb on + strand, within EX28DRAFT_2077 at 2101.926 kb on - strand, within EX28DRAFT_2077 at 2101.966 kb on + strand, within EX28DRAFT_2077 at 2102.018 kb on - strand, within EX28DRAFT_2077 at 2102.087 kb on - strand, within EX28DRAFT_2077 at 2102.189 kb on + strand, within EX28DRAFT_2077 at 2102.189 kb on + strand, within EX28DRAFT_2077
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,099,916 - -0.2 2,099,916 - +0.9 2,099,916 - +1.4 2,100,031 + EX28DRAFT_2074 0.20 +0.1 2,100,076 - EX28DRAFT_2074 0.32 +1.4 2,100,330 + +0.2 2,100,555 - EX28DRAFT_2075 0.47 +0.1 2,100,703 + EX28DRAFT_2075 0.77 -0.6 2,100,762 - EX28DRAFT_2075 0.89 -0.4 2,100,861 + EX28DRAFT_2076 0.10 -0.3 2,100,864 + EX28DRAFT_2076 0.11 -0.1 2,101,077 - EX28DRAFT_2076 0.58 +0.1 2,101,077 - EX28DRAFT_2076 0.58 -0.4 2,101,197 + EX28DRAFT_2076 0.85 +0.4 2,101,277 + +0.1 2,101,277 + -0.4 2,101,284 - +0.5 2,101,340 + +0.7 2,101,341 - -1.6 2,101,345 - -1.1 2,101,347 + -2.7 2,101,347 + +0.1 2,101,382 + -0.0 2,101,383 - +0.1 2,101,474 + EX28DRAFT_2077 0.17 -0.3 2,101,577 - EX28DRAFT_2077 0.26 +0.1 2,101,606 + EX28DRAFT_2077 0.28 -0.4 2,101,606 + EX28DRAFT_2077 0.28 -0.4 2,101,607 - EX28DRAFT_2077 0.28 +0.1 2,101,607 - EX28DRAFT_2077 0.28 -0.5 2,101,607 - EX28DRAFT_2077 0.28 -0.1 2,101,607 - EX28DRAFT_2077 0.28 +0.9 2,101,647 - EX28DRAFT_2077 0.32 -0.4 2,101,656 - EX28DRAFT_2077 0.32 -0.4 2,101,663 + EX28DRAFT_2077 0.33 +0.2 2,101,664 - EX28DRAFT_2077 0.33 +1.2 2,101,664 - EX28DRAFT_2077 0.33 +0.4 2,101,664 - EX28DRAFT_2077 0.33 -0.0 2,101,729 + EX28DRAFT_2077 0.38 +0.7 2,101,926 - EX28DRAFT_2077 0.55 +0.6 2,101,966 + EX28DRAFT_2077 0.58 +0.5 2,102,018 - EX28DRAFT_2077 0.62 +0.0 2,102,087 - EX28DRAFT_2077 0.68 +2.4 2,102,189 + EX28DRAFT_2077 0.76 -0.4 2,102,189 + EX28DRAFT_2077 0.76 -0.4
Or see this region's nucleotide sequence