Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1847 and EX28DRAFT_1848 are separated by 109 nucleotides EX28DRAFT_1848 and EX28DRAFT_1849 are separated by 75 nucleotides
EX28DRAFT_1847: EX28DRAFT_1847 - Transcriptional regulator, at 1,862,989 to 1,863,927
_1847
EX28DRAFT_1848: EX28DRAFT_1848 - Arabinose efflux permease, at 1,864,037 to 1,865,251
_1848
EX28DRAFT_1849: EX28DRAFT_1849 - flagellar hook-associated protein 3, at 1,865,327 to 1,866,280
_1849
Position (kb)
1864
1865
1866 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1863.166 kb on - strand, within EX28DRAFT_1847 at 1863.236 kb on + strand, within EX28DRAFT_1847 at 1863.264 kb on + strand, within EX28DRAFT_1847 at 1863.267 kb on + strand, within EX28DRAFT_1847 at 1863.267 kb on + strand, within EX28DRAFT_1847 at 1863.268 kb on - strand, within EX28DRAFT_1847 at 1863.323 kb on + strand, within EX28DRAFT_1847 at 1863.324 kb on - strand, within EX28DRAFT_1847 at 1863.333 kb on + strand, within EX28DRAFT_1847 at 1863.334 kb on - strand, within EX28DRAFT_1847 at 1863.334 kb on - strand, within EX28DRAFT_1847 at 1863.713 kb on + strand, within EX28DRAFT_1847 at 1863.874 kb on - strand at 1863.893 kb on - strand at 1863.995 kb on - strand at 1863.995 kb on - strand at 1864.037 kb on - strand at 1864.037 kb on - strand at 1864.083 kb on + strand at 1864.083 kb on + strand at 1864.083 kb on + strand at 1864.120 kb on + strand at 1864.120 kb on + strand at 1864.120 kb on + strand at 1864.121 kb on - strand at 1864.121 kb on - strand at 1864.121 kb on - strand at 1864.121 kb on - strand at 1864.124 kb on + strand at 1864.124 kb on + strand at 1864.124 kb on + strand at 1864.125 kb on - strand at 1864.125 kb on - strand at 1864.125 kb on - strand at 1864.125 kb on - strand at 1864.127 kb on + strand at 1864.218 kb on - strand, within EX28DRAFT_1848 at 1864.433 kb on - strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.489 kb on - strand, within EX28DRAFT_1848 at 1864.541 kb on + strand, within EX28DRAFT_1848 at 1864.590 kb on - strand, within EX28DRAFT_1848 at 1864.723 kb on + strand, within EX28DRAFT_1848 at 1864.738 kb on + strand, within EX28DRAFT_1848 at 1864.825 kb on - strand, within EX28DRAFT_1848 at 1865.080 kb on + strand, within EX28DRAFT_1848 at 1865.128 kb on + strand, within EX28DRAFT_1848 at 1865.319 kb on + strand at 1865.380 kb on - strand at 1865.725 kb on + strand, within EX28DRAFT_1849 at 1865.732 kb on - strand, within EX28DRAFT_1849 at 1865.773 kb on + strand, within EX28DRAFT_1849 at 1865.774 kb on - strand, within EX28DRAFT_1849 at 1865.823 kb on + strand, within EX28DRAFT_1849 at 1865.878 kb on + strand, within EX28DRAFT_1849 at 1865.995 kb on - strand, within EX28DRAFT_1849 at 1866.049 kb on + strand, within EX28DRAFT_1849 at 1866.082 kb on + strand, within EX28DRAFT_1849 at 1866.152 kb on - strand, within EX28DRAFT_1849 at 1866.204 kb on + strand at 1866.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,863,166 - EX28DRAFT_1847 0.19 -0.8 1,863,236 + EX28DRAFT_1847 0.26 -0.5 1,863,264 + EX28DRAFT_1847 0.29 -0.5 1,863,267 + EX28DRAFT_1847 0.30 -0.7 1,863,267 + EX28DRAFT_1847 0.30 -0.4 1,863,268 - EX28DRAFT_1847 0.30 +0.1 1,863,323 + EX28DRAFT_1847 0.36 +0.5 1,863,324 - EX28DRAFT_1847 0.36 -1.5 1,863,333 + EX28DRAFT_1847 0.37 +0.2 1,863,334 - EX28DRAFT_1847 0.37 -0.6 1,863,334 - EX28DRAFT_1847 0.37 -0.6 1,863,713 + EX28DRAFT_1847 0.77 -0.3 1,863,874 - -0.2 1,863,893 - +1.0 1,863,995 - +1.3 1,863,995 - -0.1 1,864,037 - -1.0 1,864,037 - +0.4 1,864,083 + +0.1 1,864,083 + +0.2 1,864,083 + +0.2 1,864,120 + -0.4 1,864,120 + -0.5 1,864,120 + -0.7 1,864,121 - -0.3 1,864,121 - -1.8 1,864,121 - +0.2 1,864,121 - +0.4 1,864,124 + -0.1 1,864,124 + +0.3 1,864,124 + +0.7 1,864,125 - +1.1 1,864,125 - +0.1 1,864,125 - -0.1 1,864,125 - -0.2 1,864,127 + +0.3 1,864,218 - EX28DRAFT_1848 0.15 -0.1 1,864,433 - EX28DRAFT_1848 0.33 +0.9 1,864,485 + EX28DRAFT_1848 0.37 -0.2 1,864,485 + EX28DRAFT_1848 0.37 +0.0 1,864,485 + EX28DRAFT_1848 0.37 +0.7 1,864,485 + EX28DRAFT_1848 0.37 +0.5 1,864,486 - EX28DRAFT_1848 0.37 -0.4 1,864,486 - EX28DRAFT_1848 0.37 -0.6 1,864,486 - EX28DRAFT_1848 0.37 +1.1 1,864,486 - EX28DRAFT_1848 0.37 -1.1 1,864,489 - EX28DRAFT_1848 0.37 +0.3 1,864,541 + EX28DRAFT_1848 0.41 -0.8 1,864,590 - EX28DRAFT_1848 0.46 +0.7 1,864,723 + EX28DRAFT_1848 0.56 -0.8 1,864,738 + EX28DRAFT_1848 0.58 +1.5 1,864,825 - EX28DRAFT_1848 0.65 +0.3 1,865,080 + EX28DRAFT_1848 0.86 -0.7 1,865,128 + EX28DRAFT_1848 0.90 +1.0 1,865,319 + -0.2 1,865,380 - +2.0 1,865,725 + EX28DRAFT_1849 0.42 -0.1 1,865,732 - EX28DRAFT_1849 0.42 -1.4 1,865,773 + EX28DRAFT_1849 0.47 +0.2 1,865,774 - EX28DRAFT_1849 0.47 -0.8 1,865,823 + EX28DRAFT_1849 0.52 -1.1 1,865,878 + EX28DRAFT_1849 0.58 -0.3 1,865,995 - EX28DRAFT_1849 0.70 -0.3 1,866,049 + EX28DRAFT_1849 0.76 +1.9 1,866,082 + EX28DRAFT_1849 0.79 -0.4 1,866,152 - EX28DRAFT_1849 0.86 +0.8 1,866,204 + -0.5 1,866,204 + +0.1
Or see this region's nucleotide sequence