Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1701

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1701 and EX28DRAFT_1702 are separated by 5 nucleotides EX28DRAFT_1701: EX28DRAFT_1701 - RNA, at 1,714,718 to 1,714,821 _1701 EX28DRAFT_1702: EX28DRAFT_1702 - Beta-glucosidase-related glycosidases, at 1,714,827 to 1,717,202 _1702 Position (kb) 1714 1715Strain fitness (log2 ratio) -2 -1 0 1 2at 1714.536 kb on - strandat 1714.536 kb on - strandat 1714.573 kb on + strandat 1714.642 kb on + strandat 1714.643 kb on - strandat 1714.656 kb on + strandat 1714.785 kb on - strand, within EX28DRAFT_1701at 1715.021 kb on + strandat 1715.329 kb on + strand, within EX28DRAFT_1702at 1715.330 kb on - strand, within EX28DRAFT_1702at 1715.330 kb on - strand, within EX28DRAFT_1702at 1715.330 kb on - strand, within EX28DRAFT_1702at 1715.333 kb on - strand, within EX28DRAFT_1702at 1715.333 kb on - strand, within EX28DRAFT_1702at 1715.492 kb on + strand, within EX28DRAFT_1702at 1715.493 kb on - strand, within EX28DRAFT_1702at 1715.494 kb on + strand, within EX28DRAFT_1702at 1715.494 kb on + strand, within EX28DRAFT_1702at 1715.495 kb on - strand, within EX28DRAFT_1702

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,714,536 - -2.5
1,714,536 - +0.7
1,714,573 + +0.1
1,714,642 + +0.9
1,714,643 - -0.1
1,714,656 + -1.1
1,714,785 - EX28DRAFT_1701 0.64 -1.9
1,715,021 + +0.3
1,715,329 + EX28DRAFT_1702 0.21 -0.6
1,715,330 - EX28DRAFT_1702 0.21 +0.4
1,715,330 - EX28DRAFT_1702 0.21 -0.2
1,715,330 - EX28DRAFT_1702 0.21 +2.3
1,715,333 - EX28DRAFT_1702 0.21 -0.2
1,715,333 - EX28DRAFT_1702 0.21 -0.2
1,715,492 + EX28DRAFT_1702 0.28 +1.2
1,715,493 - EX28DRAFT_1702 0.28 -0.2
1,715,494 + EX28DRAFT_1702 0.28 -0.2
1,715,494 + EX28DRAFT_1702 0.28 -1.6
1,715,495 - EX28DRAFT_1702 0.28 +0.7

Or see this region's nucleotide sequence