Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1217

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1216 and EX28DRAFT_1217 are separated by 156 nucleotidesEX28DRAFT_1217 and EX28DRAFT_1218 are separated by 61 nucleotides EX28DRAFT_1216: EX28DRAFT_1216 - Methionine synthase II (cobalamin-independent), at 1,234,941 to 1,236,044 _1216 EX28DRAFT_1217: EX28DRAFT_1217 - Rhodanese-related sulfurtransferase, at 1,236,201 to 1,236,614 _1217 EX28DRAFT_1218: EX28DRAFT_1218 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,236,676 to 1,237,695 _1218 Position (kb) 1236 1237Strain fitness (log2 ratio) -1 0 1at 1235.222 kb on - strand, within EX28DRAFT_1216at 1235.389 kb on + strand, within EX28DRAFT_1216at 1235.389 kb on + strand, within EX28DRAFT_1216at 1235.557 kb on + strand, within EX28DRAFT_1216at 1235.558 kb on - strand, within EX28DRAFT_1216at 1236.123 kb on - strandat 1236.123 kb on - strandat 1236.144 kb on + strandat 1236.352 kb on + strand, within EX28DRAFT_1217at 1236.436 kb on - strand, within EX28DRAFT_1217at 1236.478 kb on - strand, within EX28DRAFT_1217at 1236.602 kb on + strandat 1236.607 kb on + strandat 1236.649 kb on + strandat 1236.649 kb on + strandat 1236.649 kb on + strandat 1236.650 kb on - strandat 1236.650 kb on - strandat 1236.771 kb on + strandat 1236.918 kb on - strand, within EX28DRAFT_1218at 1237.128 kb on - strand, within EX28DRAFT_1218at 1237.207 kb on - strand, within EX28DRAFT_1218

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,235,222 - EX28DRAFT_1216 0.25 -0.7
1,235,389 + EX28DRAFT_1216 0.41 +0.2
1,235,389 + EX28DRAFT_1216 0.41 -1.7
1,235,557 + EX28DRAFT_1216 0.56 +0.0
1,235,558 - EX28DRAFT_1216 0.56 -0.9
1,236,123 - +1.4
1,236,123 - +0.2
1,236,144 + -1.4
1,236,352 + EX28DRAFT_1217 0.36 -0.1
1,236,436 - EX28DRAFT_1217 0.57 +1.1
1,236,478 - EX28DRAFT_1217 0.67 +0.5
1,236,602 + -0.0
1,236,607 + -0.0
1,236,649 + -1.4
1,236,649 + -0.3
1,236,649 + -0.1
1,236,650 - -0.5
1,236,650 - +0.8
1,236,771 + -0.4
1,236,918 - EX28DRAFT_1218 0.24 -0.4
1,237,128 - EX28DRAFT_1218 0.44 +1.5
1,237,207 - EX28DRAFT_1218 0.52 +0.1

Or see this region's nucleotide sequence