Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0511

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0510 and EX28DRAFT_0511 overlap by 4 nucleotidesEX28DRAFT_0511 and EX28DRAFT_0512 are separated by 12 nucleotides EX28DRAFT_0510: EX28DRAFT_0510 - colanic acid biosynthesis pyruvyl transferase WcaK, at 503,156 to 504,436 _0510 EX28DRAFT_0511: EX28DRAFT_0511 - colanic acid biosynthesis glycosyltransferase WcaL, at 504,433 to 505,653 _0511 EX28DRAFT_0512: EX28DRAFT_0512 - colanic acid biosynthesis protein WcaM, at 505,666 to 507,057 _0512 Position (kb) 504 505 506Strain fitness (log2 ratio) -1 0 1at 503.507 kb on + strand, within EX28DRAFT_0510at 503.585 kb on - strand, within EX28DRAFT_0510at 503.669 kb on + strand, within EX28DRAFT_0510at 503.819 kb on + strand, within EX28DRAFT_0510at 503.928 kb on - strand, within EX28DRAFT_0510at 504.018 kb on - strand, within EX28DRAFT_0510at 504.018 kb on - strand, within EX28DRAFT_0510at 504.018 kb on - strand, within EX28DRAFT_0510at 504.080 kb on + strand, within EX28DRAFT_0510at 504.274 kb on + strand, within EX28DRAFT_0510at 504.274 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.276 kb on + strand, within EX28DRAFT_0510at 504.277 kb on - strand, within EX28DRAFT_0510at 504.277 kb on - strand, within EX28DRAFT_0510at 504.277 kb on - strand, within EX28DRAFT_0510at 504.277 kb on - strand, within EX28DRAFT_0510at 504.277 kb on - strand, within EX28DRAFT_0510at 504.277 kb on - strand, within EX28DRAFT_0510at 504.408 kb on + strandat 504.577 kb on + strand, within EX28DRAFT_0511at 504.578 kb on - strand, within EX28DRAFT_0511at 504.935 kb on - strand, within EX28DRAFT_0511at 505.428 kb on - strand, within EX28DRAFT_0511at 505.461 kb on + strand, within EX28DRAFT_0511at 505.461 kb on + strand, within EX28DRAFT_0511at 505.461 kb on + strand, within EX28DRAFT_0511at 505.665 kb on + strandat 505.665 kb on + strandat 505.666 kb on - strandat 505.666 kb on - strandat 505.979 kb on + strand, within EX28DRAFT_0512at 506.371 kb on + strand, within EX28DRAFT_0512at 506.372 kb on - strand, within EX28DRAFT_0512at 506.450 kb on + strand, within EX28DRAFT_0512at 506.478 kb on + strand, within EX28DRAFT_0512at 506.505 kb on + strand, within EX28DRAFT_0512at 506.507 kb on + strand, within EX28DRAFT_0512at 506.537 kb on + strand, within EX28DRAFT_0512at 506.561 kb on - strand, within EX28DRAFT_0512at 506.586 kb on + strand, within EX28DRAFT_0512at 506.637 kb on - strand, within EX28DRAFT_0512at 506.637 kb on - strand, within EX28DRAFT_0512at 506.647 kb on + strand, within EX28DRAFT_0512

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
503,507 + EX28DRAFT_0510 0.27 +0.4
503,585 - EX28DRAFT_0510 0.33 +0.9
503,669 + EX28DRAFT_0510 0.40 +0.6
503,819 + EX28DRAFT_0510 0.52 +0.2
503,928 - EX28DRAFT_0510 0.60 +0.1
504,018 - EX28DRAFT_0510 0.67 +0.5
504,018 - EX28DRAFT_0510 0.67 +0.1
504,018 - EX28DRAFT_0510 0.67 -0.1
504,080 + EX28DRAFT_0510 0.72 +0.0
504,274 + EX28DRAFT_0510 0.87 +0.3
504,274 + EX28DRAFT_0510 0.87 -0.4
504,276 + EX28DRAFT_0510 0.87 -1.0
504,276 + EX28DRAFT_0510 0.87 +0.4
504,276 + EX28DRAFT_0510 0.87 -0.3
504,276 + EX28DRAFT_0510 0.87 +0.4
504,276 + EX28DRAFT_0510 0.87 -0.0
504,276 + EX28DRAFT_0510 0.87 -0.1
504,276 + EX28DRAFT_0510 0.87 +0.1
504,277 - EX28DRAFT_0510 0.88 +0.1
504,277 - EX28DRAFT_0510 0.88 -0.3
504,277 - EX28DRAFT_0510 0.88 +0.1
504,277 - EX28DRAFT_0510 0.88 -0.3
504,277 - EX28DRAFT_0510 0.88 +0.3
504,277 - EX28DRAFT_0510 0.88 -0.7
504,408 + +0.7
504,577 + EX28DRAFT_0511 0.12 +0.5
504,578 - EX28DRAFT_0511 0.12 +0.2
504,935 - EX28DRAFT_0511 0.41 +0.5
505,428 - EX28DRAFT_0511 0.81 +0.0
505,461 + EX28DRAFT_0511 0.84 -0.5
505,461 + EX28DRAFT_0511 0.84 +0.3
505,461 + EX28DRAFT_0511 0.84 +0.3
505,665 + +0.0
505,665 + +0.6
505,666 - +1.1
505,666 - +0.5
505,979 + EX28DRAFT_0512 0.22 +0.0
506,371 + EX28DRAFT_0512 0.51 +1.6
506,372 - EX28DRAFT_0512 0.51 +0.1
506,450 + EX28DRAFT_0512 0.56 +0.9
506,478 + EX28DRAFT_0512 0.58 +0.0
506,505 + EX28DRAFT_0512 0.60 -0.3
506,507 + EX28DRAFT_0512 0.60 -0.2
506,537 + EX28DRAFT_0512 0.63 +0.1
506,561 - EX28DRAFT_0512 0.64 +0.0
506,586 + EX28DRAFT_0512 0.66 +0.6
506,637 - EX28DRAFT_0512 0.70 -0.2
506,637 - EX28DRAFT_0512 0.70 -0.6
506,647 + EX28DRAFT_0512 0.70 -0.6

Or see this region's nucleotide sequence