Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0385

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0384 and EX28DRAFT_0385 are separated by 74 nucleotidesEX28DRAFT_0385 and EX28DRAFT_0386 are separated by 127 nucleotides EX28DRAFT_0384: EX28DRAFT_0384 - ABC-type oligopeptide transport system, periplasmic component, at 356,216 to 358,021 _0384 EX28DRAFT_0385: EX28DRAFT_0385 - FOG: EAL domain, at 358,096 to 359,652 _0385 EX28DRAFT_0386: EX28DRAFT_0386 - Cell wall-associated hydrolases (invasion-associated proteins), at 359,780 to 360,349 _0386 Position (kb) 358 359 360Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 357.144 kb on + strand, within EX28DRAFT_0384at 357.144 kb on + strand, within EX28DRAFT_0384at 357.145 kb on - strand, within EX28DRAFT_0384at 357.209 kb on + strand, within EX28DRAFT_0384at 357.262 kb on - strand, within EX28DRAFT_0384at 357.262 kb on - strand, within EX28DRAFT_0384at 357.264 kb on + strand, within EX28DRAFT_0384at 357.345 kb on + strand, within EX28DRAFT_0384at 357.354 kb on + strand, within EX28DRAFT_0384at 357.355 kb on - strand, within EX28DRAFT_0384at 357.430 kb on + strand, within EX28DRAFT_0384at 357.431 kb on - strand, within EX28DRAFT_0384at 357.484 kb on + strand, within EX28DRAFT_0384at 357.484 kb on + strand, within EX28DRAFT_0384at 357.729 kb on + strand, within EX28DRAFT_0384at 357.915 kb on + strandat 358.016 kb on - strandat 358.016 kb on - strandat 358.070 kb on + strandat 358.071 kb on - strandat 358.071 kb on - strandat 358.071 kb on - strandat 358.071 kb on - strandat 358.251 kb on + strandat 358.324 kb on - strand, within EX28DRAFT_0385at 358.349 kb on + strand, within EX28DRAFT_0385at 358.349 kb on + strand, within EX28DRAFT_0385at 358.489 kb on - strand, within EX28DRAFT_0385at 358.545 kb on + strand, within EX28DRAFT_0385at 358.616 kb on - strand, within EX28DRAFT_0385at 358.821 kb on - strand, within EX28DRAFT_0385at 358.847 kb on - strand, within EX28DRAFT_0385at 358.876 kb on - strand, within EX28DRAFT_0385at 358.885 kb on - strand, within EX28DRAFT_0385at 358.885 kb on - strand, within EX28DRAFT_0385at 358.886 kb on + strand, within EX28DRAFT_0385at 358.887 kb on - strand, within EX28DRAFT_0385at 358.887 kb on - strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.982 kb on - strand, within EX28DRAFT_0385at 359.088 kb on + strand, within EX28DRAFT_0385at 359.088 kb on + strand, within EX28DRAFT_0385at 359.314 kb on - strand, within EX28DRAFT_0385at 359.403 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.547 kb on - strandat 359.617 kb on + strandat 359.652 kb on + strandat 359.652 kb on + strandat 359.685 kb on + strandat 359.685 kb on + strandat 359.779 kb on - strandat 359.779 kb on - strandat 359.781 kb on + strandat 359.782 kb on - strandat 359.796 kb on - strandat 359.880 kb on - strand, within EX28DRAFT_0386at 359.880 kb on - strand, within EX28DRAFT_0386at 359.945 kb on + strand, within EX28DRAFT_0386at 359.946 kb on - strand, within EX28DRAFT_0386at 360.003 kb on + strand, within EX28DRAFT_0386at 360.023 kb on + strand, within EX28DRAFT_0386at 360.047 kb on - strand, within EX28DRAFT_0386at 360.053 kb on + strand, within EX28DRAFT_0386at 360.074 kb on - strand, within EX28DRAFT_0386at 360.127 kb on - strand, within EX28DRAFT_0386at 360.137 kb on - strand, within EX28DRAFT_0386at 360.160 kb on + strand, within EX28DRAFT_0386at 360.161 kb on - strand, within EX28DRAFT_0386at 360.165 kb on - strand, within EX28DRAFT_0386at 360.169 kb on + strand, within EX28DRAFT_0386at 360.266 kb on - strand, within EX28DRAFT_0386at 360.268 kb on + strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.319 kb on + strandat 360.320 kb on - strandat 360.322 kb on - strandat 360.385 kb on + strandat 360.386 kb on - strandat 360.393 kb on + strandat 360.393 kb on + strandat 360.421 kb on + strandat 360.499 kb on - strandat 360.499 kb on - strandat 360.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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357,144 + EX28DRAFT_0384 0.51 +0.3
357,144 + EX28DRAFT_0384 0.51 +0.0
357,145 - EX28DRAFT_0384 0.51 +0.5
357,209 + EX28DRAFT_0384 0.55 -0.8
357,262 - EX28DRAFT_0384 0.58 +0.3
357,262 - EX28DRAFT_0384 0.58 +0.4
357,264 + EX28DRAFT_0384 0.58 -1.6
357,345 + EX28DRAFT_0384 0.63 +0.6
357,354 + EX28DRAFT_0384 0.63 -0.3
357,355 - EX28DRAFT_0384 0.63 -0.4
357,430 + EX28DRAFT_0384 0.67 +2.2
357,431 - EX28DRAFT_0384 0.67 -0.8
357,484 + EX28DRAFT_0384 0.70 -0.0
357,484 + EX28DRAFT_0384 0.70 +0.3
357,729 + EX28DRAFT_0384 0.84 -0.7
357,915 + -0.2
358,016 - +0.3
358,016 - -0.1
358,070 + -0.2
358,071 - +1.4
358,071 - +0.2
358,071 - -0.3
358,071 - -0.0
358,251 + +1.1
358,324 - EX28DRAFT_0385 0.15 +0.3
358,349 + EX28DRAFT_0385 0.16 -0.3
358,349 + EX28DRAFT_0385 0.16 -0.2
358,489 - EX28DRAFT_0385 0.25 -0.7
358,545 + EX28DRAFT_0385 0.29 -1.5
358,616 - EX28DRAFT_0385 0.33 +1.0
358,821 - EX28DRAFT_0385 0.47 +0.4
358,847 - EX28DRAFT_0385 0.48 +0.1
358,876 - EX28DRAFT_0385 0.50 -0.2
358,885 - EX28DRAFT_0385 0.51 -0.3
358,885 - EX28DRAFT_0385 0.51 -0.1
358,886 + EX28DRAFT_0385 0.51 -0.8
358,887 - EX28DRAFT_0385 0.51 -0.3
358,887 - EX28DRAFT_0385 0.51 -0.6
358,889 + EX28DRAFT_0385 0.51 -0.1
358,889 + EX28DRAFT_0385 0.51 -0.5
358,889 + EX28DRAFT_0385 0.51 -0.4
358,890 - EX28DRAFT_0385 0.51 +0.0
358,890 - EX28DRAFT_0385 0.51 -0.1
358,890 - EX28DRAFT_0385 0.51 +1.0
358,982 - EX28DRAFT_0385 0.57 -0.5
359,088 + EX28DRAFT_0385 0.64 -0.4
359,088 + EX28DRAFT_0385 0.64 +0.5
359,314 - EX28DRAFT_0385 0.78 +0.1
359,403 + EX28DRAFT_0385 0.84 +0.5
359,495 + EX28DRAFT_0385 0.90 -0.1
359,495 + EX28DRAFT_0385 0.90 +0.1
359,495 + EX28DRAFT_0385 0.90 +0.1
359,495 + EX28DRAFT_0385 0.90 +0.1
359,495 + EX28DRAFT_0385 0.90 -1.1
359,495 + EX28DRAFT_0385 0.90 -0.5
359,547 - +0.3
359,617 + -0.2
359,652 + +0.5
359,652 + +0.1
359,685 + +1.4
359,685 + -1.0
359,779 - -0.1
359,779 - +0.2
359,781 + -4.0
359,782 - +0.7
359,796 - -0.3
359,880 - EX28DRAFT_0386 0.18 +0.8
359,880 - EX28DRAFT_0386 0.18 +0.1
359,945 + EX28DRAFT_0386 0.29 -1.7
359,946 - EX28DRAFT_0386 0.29 +0.1
360,003 + EX28DRAFT_0386 0.39 -0.1
360,023 + EX28DRAFT_0386 0.43 -0.2
360,047 - EX28DRAFT_0386 0.47 +0.8
360,053 + EX28DRAFT_0386 0.48 -1.2
360,074 - EX28DRAFT_0386 0.52 -1.0
360,127 - EX28DRAFT_0386 0.61 -0.2
360,137 - EX28DRAFT_0386 0.63 -0.2
360,160 + EX28DRAFT_0386 0.67 +0.9
360,161 - EX28DRAFT_0386 0.67 -0.5
360,165 - EX28DRAFT_0386 0.68 +0.5
360,169 + EX28DRAFT_0386 0.68 +0.6
360,266 - EX28DRAFT_0386 0.85 +0.5
360,268 + EX28DRAFT_0386 0.86 +1.3
360,269 - EX28DRAFT_0386 0.86 +0.7
360,269 - EX28DRAFT_0386 0.86 +0.2
360,269 - EX28DRAFT_0386 0.86 -0.1
360,269 - EX28DRAFT_0386 0.86 +1.0
360,269 - EX28DRAFT_0386 0.86 -0.7
360,319 + -1.6
360,320 - -0.2
360,322 - -0.2
360,385 + +0.1
360,386 - -0.6
360,393 + +0.3
360,393 + +0.6
360,421 + +0.2
360,499 - -0.4
360,499 - +1.3
360,596 + -0.8

Or see this region's nucleotide sequence