Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12895

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12890 and ABIE41_RS12895 are separated by 122 nucleotidesABIE41_RS12895 and ABIE41_RS12900 overlap by 4 nucleotidesABIE41_RS12900 and ABIE41_RS12905 overlap by 4 nucleotides ABIE41_RS12890: ABIE41_RS12890 - acetolactate synthase 3 large subunit, at 2,639,327 to 2,641,090 _RS12890 ABIE41_RS12895: ABIE41_RS12895 - aspartate/glutamate racemase family protein, at 2,641,213 to 2,641,920 _RS12895 ABIE41_RS12900: ABIE41_RS12900 - glutathione S-transferase family protein, at 2,641,917 to 2,642,630 _RS12900 ABIE41_RS12905: ABIE41_RS12905 - acetolactate synthase small subunit, at 2,642,627 to 2,643,166 _RS12905 Position (kb) 2641 2642Strain fitness (log2 ratio) -2 -1 0 1 2at 2641.264 kb on + strandat 2641.264 kb on + strandat 2641.264 kb on + strandat 2641.267 kb on + strandat 2641.612 kb on + strand, within ABIE41_RS12895at 2641.612 kb on + strand, within ABIE41_RS12895at 2641.693 kb on + strand, within ABIE41_RS12895at 2641.742 kb on - strand, within ABIE41_RS12895at 2641.944 kb on + strandat 2641.944 kb on + strandat 2641.944 kb on + strandat 2641.944 kb on + strandat 2641.945 kb on - strandat 2641.945 kb on - strandat 2641.945 kb on - strandat 2642.136 kb on + strand, within ABIE41_RS12900at 2642.142 kb on + strand, within ABIE41_RS12900at 2642.143 kb on - strand, within ABIE41_RS12900at 2642.143 kb on - strand, within ABIE41_RS12900at 2642.481 kb on + strand, within ABIE41_RS12900at 2642.481 kb on + strand, within ABIE41_RS12900at 2642.756 kb on + strand, within ABIE41_RS12905at 2642.757 kb on - strand, within ABIE41_RS12905

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,641,264 + +2.2
2,641,264 + -0.5
2,641,264 + -0.7
2,641,267 + +0.8
2,641,612 + ABIE41_RS12895 0.56 -0.8
2,641,612 + ABIE41_RS12895 0.56 -0.2
2,641,693 + ABIE41_RS12895 0.68 -0.4
2,641,742 - ABIE41_RS12895 0.75 -1.8
2,641,944 + -0.3
2,641,944 + -0.1
2,641,944 + +0.2
2,641,944 + +0.2
2,641,945 - -1.2
2,641,945 - -1.8
2,641,945 - -1.5
2,642,136 + ABIE41_RS12900 0.31 +1.0
2,642,142 + ABIE41_RS12900 0.32 -2.3
2,642,143 - ABIE41_RS12900 0.32 -1.0
2,642,143 - ABIE41_RS12900 0.32 -0.5
2,642,481 + ABIE41_RS12900 0.79 -1.2
2,642,481 + ABIE41_RS12900 0.79 +1.4
2,642,756 + ABIE41_RS12905 0.24 -1.6
2,642,757 - ABIE41_RS12905 0.24 -0.4

Or see this region's nucleotide sequence