Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04950

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04945 and ABIE41_RS04950 overlap by 4 nucleotidesABIE41_RS04950 and ABIE41_RS04955 are separated by 183 nucleotidesABIE41_RS04955 and ABIE41_RS04960 are separated by 265 nucleotides ABIE41_RS04945: ABIE41_RS04945 - beta-ketoacyl-ACP synthase, at 1,028,849 to 1,029,976 _RS04945 ABIE41_RS04950: ABIE41_RS04950 - 3-hydroxyacyl-ACP dehydratase FabZ family protein, at 1,029,973 to 1,030,446 _RS04950 ABIE41_RS04955: ABIE41_RS04955 - acyl carrier protein, at 1,030,630 to 1,030,911 _RS04955 ABIE41_RS04960: ABIE41_RS04960 - methyl-accepting chemotaxis protein, at 1,031,177 to 1,033,111 _RS04960 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1029.380 kb on + strand, within ABIE41_RS04945at 1029.381 kb on + strand, within ABIE41_RS04945at 1029.381 kb on + strand, within ABIE41_RS04945at 1029.381 kb on + strand, within ABIE41_RS04945at 1029.381 kb on + strand, within ABIE41_RS04945at 1029.382 kb on - strand, within ABIE41_RS04945at 1029.382 kb on - strand, within ABIE41_RS04945at 1029.382 kb on - strand, within ABIE41_RS04945at 1029.382 kb on - strand, within ABIE41_RS04945at 1029.382 kb on - strand, within ABIE41_RS04945at 1029.754 kb on - strand, within ABIE41_RS04945at 1029.914 kb on - strandat 1030.127 kb on + strand, within ABIE41_RS04950at 1030.262 kb on + strand, within ABIE41_RS04950at 1030.262 kb on + strand, within ABIE41_RS04950at 1030.433 kb on + strandat 1030.691 kb on + strand, within ABIE41_RS04955at 1030.691 kb on + strand, within ABIE41_RS04955at 1031.017 kb on - strandat 1031.258 kb on + strandat 1031.258 kb on + strandat 1031.259 kb on - strandat 1031.259 kb on - strandat 1031.259 kb on - strandat 1031.259 kb on - strandat 1031.259 kb on - strandat 1031.369 kb on + strandat 1031.369 kb on + strandat 1031.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,029,380 + ABIE41_RS04945 0.47 -0.3
1,029,381 + ABIE41_RS04945 0.47 -0.6
1,029,381 + ABIE41_RS04945 0.47 -1.2
1,029,381 + ABIE41_RS04945 0.47 -2.0
1,029,381 + ABIE41_RS04945 0.47 -0.6
1,029,382 - ABIE41_RS04945 0.47 +2.3
1,029,382 - ABIE41_RS04945 0.47 -0.6
1,029,382 - ABIE41_RS04945 0.47 -1.4
1,029,382 - ABIE41_RS04945 0.47 -0.3
1,029,382 - ABIE41_RS04945 0.47 -0.4
1,029,754 - ABIE41_RS04945 0.80 -1.4
1,029,914 - -1.3
1,030,127 + ABIE41_RS04950 0.32 -0.2
1,030,262 + ABIE41_RS04950 0.61 +0.2
1,030,262 + ABIE41_RS04950 0.61 +0.7
1,030,433 + +0.2
1,030,691 + ABIE41_RS04955 0.22 -2.5
1,030,691 + ABIE41_RS04955 0.22 -3.5
1,031,017 - -1.8
1,031,258 + +0.4
1,031,258 + +1.4
1,031,259 - +0.1
1,031,259 - -0.7
1,031,259 - -0.6
1,031,259 - +0.2
1,031,259 - -0.1
1,031,369 + +3.3
1,031,369 + +0.7
1,031,369 + +0.4

Or see this region's nucleotide sequence