Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29535

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29530 and ABIE40_RS29535 overlap by 74 nucleotidesABIE40_RS29535 and ABIE40_RS29540 are separated by 73 nucleotides ABIE40_RS29530: ABIE40_RS29530 - hypothetical protein, at 600,128 to 600,865 _RS29530 ABIE40_RS29535: ABIE40_RS29535 - cupin domain-containing protein, at 600,792 to 601,145 _RS29535 ABIE40_RS29540: ABIE40_RS29540 - hypothetical protein, at 601,219 to 601,554 _RS29540 Position (kb) 600 601 602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 599.841 kb on + strandat 599.887 kb on - strandat 599.887 kb on - strandat 599.887 kb on - strandat 599.946 kb on + strandat 599.947 kb on - strandat 599.947 kb on - strandat 599.947 kb on - strandat 599.947 kb on - strandat 600.011 kb on + strandat 600.011 kb on + strandat 600.011 kb on + strandat 600.011 kb on + strandat 600.011 kb on + strandat 600.012 kb on - strandat 600.012 kb on - strandat 600.047 kb on + strandat 600.059 kb on - strandat 600.084 kb on + strandat 600.084 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.244 kb on + strand, within ABIE40_RS29530at 600.245 kb on - strand, within ABIE40_RS29530at 600.321 kb on + strand, within ABIE40_RS29530at 600.321 kb on + strand, within ABIE40_RS29530at 600.322 kb on - strand, within ABIE40_RS29530at 600.472 kb on + strand, within ABIE40_RS29530at 600.543 kb on - strand, within ABIE40_RS29530at 600.543 kb on - strand, within ABIE40_RS29530at 600.577 kb on + strand, within ABIE40_RS29530at 600.598 kb on + strand, within ABIE40_RS29530at 600.598 kb on + strand, within ABIE40_RS29530at 600.598 kb on + strand, within ABIE40_RS29530at 600.657 kb on + strand, within ABIE40_RS29530at 600.658 kb on - strand, within ABIE40_RS29530at 600.658 kb on - strand, within ABIE40_RS29530at 600.736 kb on - strand, within ABIE40_RS29530at 600.832 kb on + strandat 600.832 kb on + strandat 600.832 kb on + strandat 600.832 kb on + strandat 600.832 kb on + strandat 600.832 kb on + strandat 600.833 kb on - strandat 600.833 kb on - strandat 600.884 kb on + strand, within ABIE40_RS29535at 600.885 kb on - strand, within ABIE40_RS29535at 600.892 kb on + strand, within ABIE40_RS29535at 600.892 kb on + strand, within ABIE40_RS29535at 600.892 kb on + strand, within ABIE40_RS29535at 600.892 kb on + strand, within ABIE40_RS29535at 600.892 kb on + strand, within ABIE40_RS29535at 600.893 kb on - strand, within ABIE40_RS29535at 600.893 kb on - strand, within ABIE40_RS29535at 600.893 kb on - strand, within ABIE40_RS29535at 601.025 kb on - strand, within ABIE40_RS29535at 601.076 kb on - strand, within ABIE40_RS29535at 601.147 kb on + strandat 601.148 kb on - strandat 601.148 kb on - strandat 601.148 kb on - strandat 601.175 kb on - strandat 601.207 kb on - strandat 601.218 kb on + strandat 601.219 kb on - strandat 601.302 kb on - strand, within ABIE40_RS29540at 601.397 kb on - strand, within ABIE40_RS29540at 601.512 kb on + strand, within ABIE40_RS29540at 601.512 kb on + strand, within ABIE40_RS29540at 601.512 kb on + strand, within ABIE40_RS29540at 601.512 kb on + strand, within ABIE40_RS29540at 601.513 kb on - strand, within ABIE40_RS29540at 601.525 kb on + strandat 601.573 kb on + strandat 601.573 kb on + strandat 601.574 kb on - strandat 601.574 kb on - strandat 601.574 kb on - strandat 601.575 kb on + strandat 601.623 kb on + strandat 601.677 kb on + strandat 601.678 kb on - strandat 601.683 kb on + strandat 601.684 kb on - strandat 601.684 kb on - strandat 601.756 kb on - strandat 601.838 kb on + strandat 601.838 kb on + strandat 601.838 kb on + strandat 601.838 kb on + strandat 601.838 kb on + strandat 601.846 kb on + strandat 601.846 kb on + strandat 601.846 kb on + strandat 601.847 kb on - strandat 601.907 kb on - strandat 602.042 kb on - strandat 602.112 kb on - strandat 602.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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599,841 + -0.6
599,887 - -3.6
599,887 - -0.9
599,887 - +1.7
599,946 + -1.0
599,947 - -2.8
599,947 - -1.0
599,947 - +0.9
599,947 - -1.5
600,011 + +0.4
600,011 + -0.7
600,011 + +2.7
600,011 + +0.7
600,011 + +0.5
600,012 - +0.3
600,012 - -1.7
600,047 + +2.3
600,059 - -4.3
600,084 + -0.3
600,084 + +0.4
600,099 + +1.9
600,099 + -0.0
600,099 + +0.6
600,244 + ABIE40_RS29530 0.16 +1.0
600,245 - ABIE40_RS29530 0.16 +1.0
600,321 + ABIE40_RS29530 0.26 +0.2
600,321 + ABIE40_RS29530 0.26 +0.7
600,322 - ABIE40_RS29530 0.26 +1.4
600,472 + ABIE40_RS29530 0.47 +3.3
600,543 - ABIE40_RS29530 0.56 +2.1
600,543 - ABIE40_RS29530 0.56 +1.3
600,577 + ABIE40_RS29530 0.61 -0.4
600,598 + ABIE40_RS29530 0.64 +1.5
600,598 + ABIE40_RS29530 0.64 -3.0
600,598 + ABIE40_RS29530 0.64 -1.6
600,657 + ABIE40_RS29530 0.72 +2.4
600,658 - ABIE40_RS29530 0.72 -0.6
600,658 - ABIE40_RS29530 0.72 -0.4
600,736 - ABIE40_RS29530 0.82 -2.8
600,832 + +0.2
600,832 + +0.2
600,832 + +0.8
600,832 + -1.9
600,832 + -1.2
600,832 + -1.7
600,833 - -2.5
600,833 - +1.3
600,884 + ABIE40_RS29535 0.26 +0.0
600,885 - ABIE40_RS29535 0.26 +3.5
600,892 + ABIE40_RS29535 0.28 -1.4
600,892 + ABIE40_RS29535 0.28 +1.1
600,892 + ABIE40_RS29535 0.28 -1.5
600,892 + ABIE40_RS29535 0.28 +1.0
600,892 + ABIE40_RS29535 0.28 +2.7
600,893 - ABIE40_RS29535 0.29 -4.0
600,893 - ABIE40_RS29535 0.29 -1.6
600,893 - ABIE40_RS29535 0.29 -3.2
601,025 - ABIE40_RS29535 0.66 -0.9
601,076 - ABIE40_RS29535 0.80 +0.9
601,147 + -1.4
601,148 - -0.6
601,148 - +0.4
601,148 - -2.3
601,175 - +1.4
601,207 - -1.5
601,218 + +0.1
601,219 - +0.5
601,302 - ABIE40_RS29540 0.25 -2.7
601,397 - ABIE40_RS29540 0.53 +0.3
601,512 + ABIE40_RS29540 0.87 -1.5
601,512 + ABIE40_RS29540 0.87 +0.3
601,512 + ABIE40_RS29540 0.87 +1.1
601,512 + ABIE40_RS29540 0.87 +1.5
601,513 - ABIE40_RS29540 0.88 -3.7
601,525 + -1.0
601,573 + -1.0
601,573 + -3.0
601,574 - -1.0
601,574 - +0.5
601,574 - -0.9
601,575 + +0.6
601,623 + +3.1
601,677 + -2.8
601,678 - -1.3
601,683 + -1.0
601,684 - +0.1
601,684 - -2.3
601,756 - +1.9
601,838 + +0.7
601,838 + +1.7
601,838 + -3.1
601,838 + -0.5
601,838 + +2.4
601,846 + -0.7
601,846 + -0.1
601,846 + +0.1
601,847 - +0.8
601,907 - +1.1
602,042 - -0.1
602,112 - +0.1
602,112 - -2.6

Or see this region's nucleotide sequence