Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29325 and ABIE40_RS29330 are separated by 95 nucleotides ABIE40_RS29330 and ABIE40_RS29335 are separated by 320 nucleotides ABIE40_RS29335 and ABIE40_RS29340 are separated by 28 nucleotides ABIE40_RS29340 and ABIE40_RS29345 are separated by 95 nucleotides
ABIE40_RS29325: ABIE40_RS29325 - SDR family oxidoreductase, at 562,501 to 563,229
_RS29325
ABIE40_RS29330: ABIE40_RS29330 - helix-turn-helix domain-containing protein, at 563,325 to 563,747
_RS29330
ABIE40_RS29335: ABIE40_RS29335 - hypothetical protein, at 564,068 to 564,238
_RS29335
ABIE40_RS29340: ABIE40_RS29340 - alpha/beta hydrolase, at 564,267 to 565,103
_RS29340
ABIE40_RS29345: ABIE40_RS29345 - Rid family hydrolase, at 565,199 to 565,648
_RS29345
Position (kb) 564
565 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 563.198 kb on - strand at 563.244 kb on + strand at 563.245 kb on - strand at 563.261 kb on + strand at 563.263 kb on + strand at 563.277 kb on - strand at 563.300 kb on - strand at 563.318 kb on + strand at 563.321 kb on - strand at 563.355 kb on - strand at 563.401 kb on + strand, within ABIE40_RS29330 at 563.411 kb on - strand, within ABIE40_RS29330 at 563.626 kb on - strand, within ABIE40_RS29330 at 563.627 kb on + strand, within ABIE40_RS29330 at 563.627 kb on + strand, within ABIE40_RS29330 at 563.627 kb on + strand, within ABIE40_RS29330 at 563.627 kb on + strand, within ABIE40_RS29330 at 563.627 kb on - strand, within ABIE40_RS29330 at 563.628 kb on - strand, within ABIE40_RS29330 at 563.628 kb on - strand, within ABIE40_RS29330 at 563.676 kb on + strand, within ABIE40_RS29330 at 563.677 kb on - strand, within ABIE40_RS29330 at 563.677 kb on - strand, within ABIE40_RS29330 at 563.694 kb on + strand, within ABIE40_RS29330 at 563.694 kb on + strand, within ABIE40_RS29330 at 563.695 kb on - strand, within ABIE40_RS29330 at 563.695 kb on - strand, within ABIE40_RS29330 at 563.763 kb on + strand at 563.763 kb on + strand at 563.763 kb on + strand at 563.781 kb on + strand at 563.781 kb on + strand at 563.799 kb on + strand at 563.799 kb on + strand at 563.800 kb on - strand at 563.800 kb on - strand at 564.137 kb on + strand, within ABIE40_RS29335 at 564.137 kb on + strand, within ABIE40_RS29335 at 564.138 kb on - strand, within ABIE40_RS29335 at 564.138 kb on - strand, within ABIE40_RS29335 at 564.142 kb on - strand, within ABIE40_RS29335 at 564.275 kb on + strand at 564.275 kb on + strand at 564.275 kb on + strand at 564.276 kb on - strand at 564.276 kb on - strand at 564.276 kb on - strand at 564.276 kb on - strand at 564.276 kb on - strand at 564.277 kb on + strand at 564.277 kb on + strand at 564.278 kb on - strand at 564.278 kb on - strand at 564.278 kb on - strand at 564.278 kb on - strand at 564.278 kb on - strand at 564.278 kb on - strand at 564.306 kb on + strand at 564.307 kb on - strand at 564.489 kb on + strand, within ABIE40_RS29340 at 564.489 kb on + strand, within ABIE40_RS29340 at 564.489 kb on + strand, within ABIE40_RS29340 at 564.489 kb on + strand, within ABIE40_RS29340 at 564.489 kb on + strand, within ABIE40_RS29340 at 564.490 kb on - strand, within ABIE40_RS29340 at 564.490 kb on - strand, within ABIE40_RS29340 at 564.490 kb on - strand, within ABIE40_RS29340 at 564.490 kb on - strand, within ABIE40_RS29340 at 564.771 kb on + strand, within ABIE40_RS29340 at 564.772 kb on - strand, within ABIE40_RS29340 at 564.862 kb on - strand, within ABIE40_RS29340 at 564.914 kb on + strand, within ABIE40_RS29340 at 564.914 kb on + strand, within ABIE40_RS29340 at 564.914 kb on + strand, within ABIE40_RS29340 at 564.914 kb on + strand, within ABIE40_RS29340 at 565.182 kb on + strand at 565.182 kb on + strand at 565.183 kb on - strand at 565.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 563,198 - -3.2 563,244 + +1.1 563,245 - -0.6 563,261 + -1.2 563,263 + -0.7 563,277 - -3.5 563,300 - -0.3 563,318 + -1.7 563,321 - +0.1 563,355 - +1.5 563,401 + ABIE40_RS29330 0.18 -4.6 563,411 - ABIE40_RS29330 0.20 +0.7 563,626 - ABIE40_RS29330 0.71 +0.3 563,627 + ABIE40_RS29330 0.71 +0.3 563,627 + ABIE40_RS29330 0.71 +0.6 563,627 + ABIE40_RS29330 0.71 +1.3 563,627 + ABIE40_RS29330 0.71 -1.1 563,627 - ABIE40_RS29330 0.71 +1.1 563,628 - ABIE40_RS29330 0.72 -2.4 563,628 - ABIE40_RS29330 0.72 +1.9 563,676 + ABIE40_RS29330 0.83 -0.2 563,677 - ABIE40_RS29330 0.83 -1.5 563,677 - ABIE40_RS29330 0.83 -0.7 563,694 + ABIE40_RS29330 0.87 -3.5 563,694 + ABIE40_RS29330 0.87 +0.4 563,695 - ABIE40_RS29330 0.87 -0.8 563,695 - ABIE40_RS29330 0.87 -0.4 563,763 + -0.6 563,763 + -1.4 563,763 + +0.1 563,781 + -2.3 563,781 + +0.6 563,799 + -0.6 563,799 + +0.5 563,800 - -0.9 563,800 - -2.0 564,137 + ABIE40_RS29335 0.40 -3.4 564,137 + ABIE40_RS29335 0.40 +1.2 564,138 - ABIE40_RS29335 0.41 -4.0 564,138 - ABIE40_RS29335 0.41 -1.6 564,142 - ABIE40_RS29335 0.43 -3.8 564,275 + -2.7 564,275 + -4.0 564,275 + -0.0 564,276 - -1.2 564,276 - +1.1 564,276 - -1.3 564,276 - -4.1 564,276 - +1.4 564,277 + +1.0 564,277 + +1.3 564,278 - -0.9 564,278 - -3.9 564,278 - +0.4 564,278 - -3.3 564,278 - -1.5 564,278 - +1.2 564,306 + +1.9 564,307 - -0.8 564,489 + ABIE40_RS29340 0.27 +0.6 564,489 + ABIE40_RS29340 0.27 +0.5 564,489 + ABIE40_RS29340 0.27 -0.3 564,489 + ABIE40_RS29340 0.27 +1.7 564,489 + ABIE40_RS29340 0.27 -1.3 564,490 - ABIE40_RS29340 0.27 -0.4 564,490 - ABIE40_RS29340 0.27 +0.7 564,490 - ABIE40_RS29340 0.27 -2.4 564,490 - ABIE40_RS29340 0.27 +2.2 564,771 + ABIE40_RS29340 0.60 -2.9 564,772 - ABIE40_RS29340 0.60 +1.2 564,862 - ABIE40_RS29340 0.71 -1.2 564,914 + ABIE40_RS29340 0.77 -1.8 564,914 + ABIE40_RS29340 0.77 +0.5 564,914 + ABIE40_RS29340 0.77 -0.8 564,914 + ABIE40_RS29340 0.77 +2.2 565,182 + +0.6 565,182 + -1.9 565,183 - -1.8 565,198 - -3.0
Or see this region's nucleotide sequence