Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28695

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS28690 and ABIE40_RS28695 are separated by 178 nucleotidesABIE40_RS28695 and ABIE40_RS28700 are separated by 104 nucleotides ABIE40_RS28690: ABIE40_RS28690 - thiamine pyrophosphate-requiring protein, at 436,493 to 438,280 _RS28690 ABIE40_RS28695: ABIE40_RS28695 - DUF6766 family protein, at 438,459 to 439,130 _RS28695 ABIE40_RS28700: ABIE40_RS28700 - flavodoxin family protein, at 439,235 to 440,344 _RS28700 Position (kb) 438 439 440Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 437.499 kb on - strand, within ABIE40_RS28690at 437.534 kb on - strand, within ABIE40_RS28690at 437.747 kb on - strand, within ABIE40_RS28690at 437.747 kb on - strand, within ABIE40_RS28690at 437.747 kb on - strand, within ABIE40_RS28690at 437.772 kb on + strand, within ABIE40_RS28690at 437.772 kb on + strand, within ABIE40_RS28690at 437.772 kb on + strand, within ABIE40_RS28690at 437.773 kb on - strand, within ABIE40_RS28690at 437.773 kb on - strand, within ABIE40_RS28690at 438.021 kb on + strand, within ABIE40_RS28690at 438.021 kb on + strand, within ABIE40_RS28690at 438.022 kb on - strand, within ABIE40_RS28690at 438.210 kb on + strandat 438.227 kb on + strandat 438.227 kb on + strandat 438.228 kb on - strandat 438.240 kb on + strandat 438.241 kb on - strandat 438.287 kb on - strandat 438.316 kb on - strandat 438.388 kb on - strandat 438.398 kb on + strandat 438.443 kb on + strandat 438.444 kb on - strandat 438.444 kb on - strandat 438.460 kb on + strandat 438.461 kb on - strandat 438.461 kb on - strandat 438.743 kb on - strand, within ABIE40_RS28695at 438.748 kb on + strand, within ABIE40_RS28695at 438.748 kb on + strand, within ABIE40_RS28695at 438.748 kb on + strand, within ABIE40_RS28695at 438.884 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.896 kb on - strand, within ABIE40_RS28695at 438.970 kb on + strand, within ABIE40_RS28695at 438.971 kb on - strand, within ABIE40_RS28695at 438.971 kb on - strand, within ABIE40_RS28695at 439.018 kb on + strand, within ABIE40_RS28695at 439.018 kb on + strand, within ABIE40_RS28695at 439.019 kb on - strand, within ABIE40_RS28695at 439.080 kb on - strandat 439.123 kb on + strandat 439.124 kb on - strandat 439.124 kb on - strandat 439.144 kb on + strandat 439.209 kb on + strandat 439.228 kb on + strandat 439.228 kb on + strandat 439.228 kb on + strandat 439.229 kb on - strandat 439.229 kb on - strandat 439.235 kb on - strandat 439.235 kb on - strandat 439.255 kb on + strandat 439.255 kb on + strandat 439.256 kb on - strandat 439.256 kb on - strandat 439.372 kb on + strand, within ABIE40_RS28700at 439.416 kb on - strand, within ABIE40_RS28700at 439.416 kb on - strand, within ABIE40_RS28700at 439.463 kb on + strand, within ABIE40_RS28700at 439.463 kb on + strand, within ABIE40_RS28700at 439.463 kb on + strand, within ABIE40_RS28700at 439.464 kb on - strand, within ABIE40_RS28700at 439.464 kb on - strand, within ABIE40_RS28700at 439.478 kb on + strand, within ABIE40_RS28700at 439.478 kb on + strand, within ABIE40_RS28700at 439.479 kb on - strand, within ABIE40_RS28700at 439.718 kb on + strand, within ABIE40_RS28700at 439.719 kb on - strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.731 kb on + strand, within ABIE40_RS28700at 439.732 kb on - strand, within ABIE40_RS28700at 439.732 kb on - strand, within ABIE40_RS28700at 439.732 kb on - strand, within ABIE40_RS28700at 439.732 kb on - strand, within ABIE40_RS28700at 439.732 kb on - strand, within ABIE40_RS28700at 439.732 kb on - strand, within ABIE40_RS28700at 439.794 kb on - strand, within ABIE40_RS28700at 439.837 kb on + strand, within ABIE40_RS28700at 439.837 kb on + strand, within ABIE40_RS28700at 439.837 kb on + strand, within ABIE40_RS28700at 439.838 kb on - strand, within ABIE40_RS28700at 439.838 kb on - strand, within ABIE40_RS28700at 439.841 kb on + strand, within ABIE40_RS28700at 439.841 kb on + strand, within ABIE40_RS28700at 439.841 kb on + strand, within ABIE40_RS28700at 439.841 kb on + strand, within ABIE40_RS28700at 439.842 kb on - strand, within ABIE40_RS28700at 439.842 kb on - strand, within ABIE40_RS28700at 439.898 kb on - strand, within ABIE40_RS28700at 440.095 kb on + strand, within ABIE40_RS28700at 440.096 kb on - strand, within ABIE40_RS28700

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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437,499 - ABIE40_RS28690 0.56 +3.4
437,534 - ABIE40_RS28690 0.58 +2.1
437,747 - ABIE40_RS28690 0.70 -0.1
437,747 - ABIE40_RS28690 0.70 -2.5
437,747 - ABIE40_RS28690 0.70 -1.1
437,772 + ABIE40_RS28690 0.72 +0.6
437,772 + ABIE40_RS28690 0.72 -0.6
437,772 + ABIE40_RS28690 0.72 -0.6
437,773 - ABIE40_RS28690 0.72 -4.7
437,773 - ABIE40_RS28690 0.72 +2.9
438,021 + ABIE40_RS28690 0.85 +2.0
438,021 + ABIE40_RS28690 0.85 +0.8
438,022 - ABIE40_RS28690 0.86 +0.6
438,210 + +1.3
438,227 + +3.2
438,227 + +0.3
438,228 - +1.5
438,240 + -0.0
438,241 - +0.5
438,287 - -2.3
438,316 - -3.6
438,388 - +0.2
438,398 + +1.2
438,443 + -1.1
438,444 - -0.2
438,444 - -2.6
438,460 + -2.0
438,461 - -2.0
438,461 - -2.5
438,743 - ABIE40_RS28695 0.42 +1.1
438,748 + ABIE40_RS28695 0.43 -0.9
438,748 + ABIE40_RS28695 0.43 +1.5
438,748 + ABIE40_RS28695 0.43 -1.6
438,884 + ABIE40_RS28695 0.63 -3.1
438,895 + ABIE40_RS28695 0.65 +1.6
438,895 + ABIE40_RS28695 0.65 -1.3
438,895 + ABIE40_RS28695 0.65 +1.3
438,895 + ABIE40_RS28695 0.65 +1.1
438,896 - ABIE40_RS28695 0.65 +1.3
438,970 + ABIE40_RS28695 0.76 +0.0
438,971 - ABIE40_RS28695 0.76 +3.3
438,971 - ABIE40_RS28695 0.76 +2.2
439,018 + ABIE40_RS28695 0.83 -0.1
439,018 + ABIE40_RS28695 0.83 -4.5
439,019 - ABIE40_RS28695 0.83 +2.2
439,080 - -4.2
439,123 + -0.5
439,124 - +2.0
439,124 - -2.2
439,144 + -0.8
439,209 + -0.7
439,228 + +1.5
439,228 + +0.4
439,228 + -2.7
439,229 - -0.4
439,229 - +0.8
439,235 - +1.8
439,235 - +0.7
439,255 + +0.1
439,255 + -3.0
439,256 - +0.4
439,256 - -0.3
439,372 + ABIE40_RS28700 0.12 +1.1
439,416 - ABIE40_RS28700 0.16 -0.0
439,416 - ABIE40_RS28700 0.16 +1.1
439,463 + ABIE40_RS28700 0.21 -0.6
439,463 + ABIE40_RS28700 0.21 -3.1
439,463 + ABIE40_RS28700 0.21 +0.3
439,464 - ABIE40_RS28700 0.21 +1.9
439,464 - ABIE40_RS28700 0.21 -0.9
439,478 + ABIE40_RS28700 0.22 -3.2
439,478 + ABIE40_RS28700 0.22 +2.2
439,479 - ABIE40_RS28700 0.22 -0.6
439,718 + ABIE40_RS28700 0.44 -1.6
439,719 - ABIE40_RS28700 0.44 -1.9
439,731 + ABIE40_RS28700 0.45 -0.3
439,731 + ABIE40_RS28700 0.45 -0.2
439,731 + ABIE40_RS28700 0.45 -0.7
439,731 + ABIE40_RS28700 0.45 +0.8
439,731 + ABIE40_RS28700 0.45 +1.0
439,731 + ABIE40_RS28700 0.45 -2.4
439,731 + ABIE40_RS28700 0.45 -3.6
439,731 + ABIE40_RS28700 0.45 -2.7
439,731 + ABIE40_RS28700 0.45 +1.1
439,731 + ABIE40_RS28700 0.45 +0.4
439,731 + ABIE40_RS28700 0.45 -0.4
439,732 - ABIE40_RS28700 0.45 -2.0
439,732 - ABIE40_RS28700 0.45 -0.2
439,732 - ABIE40_RS28700 0.45 -0.2
439,732 - ABIE40_RS28700 0.45 -0.3
439,732 - ABIE40_RS28700 0.45 +2.3
439,732 - ABIE40_RS28700 0.45 -3.0
439,794 - ABIE40_RS28700 0.50 -0.4
439,837 + ABIE40_RS28700 0.54 +0.7
439,837 + ABIE40_RS28700 0.54 +0.7
439,837 + ABIE40_RS28700 0.54 +0.3
439,838 - ABIE40_RS28700 0.54 +0.2
439,838 - ABIE40_RS28700 0.54 -1.6
439,841 + ABIE40_RS28700 0.55 -2.2
439,841 + ABIE40_RS28700 0.55 -1.2
439,841 + ABIE40_RS28700 0.55 -1.3
439,841 + ABIE40_RS28700 0.55 -2.0
439,842 - ABIE40_RS28700 0.55 +0.7
439,842 - ABIE40_RS28700 0.55 +1.7
439,898 - ABIE40_RS28700 0.60 +0.7
440,095 + ABIE40_RS28700 0.77 +1.2
440,096 - ABIE40_RS28700 0.78 -0.9

Or see this region's nucleotide sequence