Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25215

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,213,737	+		ABIE40_RS25210	0.61	-0.8
1,213,874	+		ABIE40_RS25210	0.69	-2.8
1,213,892	+		ABIE40_RS25210	0.70	+1.8
1,213,892	+		ABIE40_RS25210	0.70	+0.5
1,213,892	+		ABIE40_RS25210	0.70	-2.2
1,213,892	+		ABIE40_RS25210	0.70	+1.3
1,213,892	+		ABIE40_RS25210	0.70	-1.2
1,213,892	+		ABIE40_RS25210	0.70	+0.3
1,213,892	+		ABIE40_RS25210	0.70	-4.5
1,213,892	+		ABIE40_RS25210	0.70	+0.4
1,213,892	+		ABIE40_RS25210	0.70	+0.2
1,213,892	+		ABIE40_RS25210	0.70	-0.9
1,213,892	+		ABIE40_RS25210	0.70	+0.8
1,213,892	+		ABIE40_RS25210	0.70	-3.5
1,213,892	+		ABIE40_RS25210	0.70	-0.5
1,213,892	+		ABIE40_RS25210	0.70	-2.4
1,213,892	+		ABIE40_RS25210	0.70	+0.2
1,213,893	-		ABIE40_RS25210	0.70	-2.4
1,213,893	-		ABIE40_RS25210	0.70	+0.3
1,213,893	-		ABIE40_RS25210	0.70	-2.7
1,213,893	-		ABIE40_RS25210	0.70	-1.0
1,213,893	-		ABIE40_RS25210	0.70	+1.7
1,213,893	-		ABIE40_RS25210	0.70	+1.1
1,213,980	+		ABIE40_RS25210	0.75	-2.0
1,213,980	+		ABIE40_RS25210	0.75	-2.5
1,213,981	-		ABIE40_RS25210	0.75	-0.6
1,213,981	-		ABIE40_RS25210	0.75	-1.2
1,214,070	+		ABIE40_RS25210	0.80	-0.4
1,214,071	-		ABIE40_RS25210	0.80	+0.8
1,214,162	+		ABIE40_RS25210	0.85	-0.0
1,214,256	+				-0.7
1,214,257	-				+0.3
1,214,324	+				+0.4
1,214,324	+				-0.8
1,214,325	-				+2.7
1,214,325	-				-3.8
1,214,392	+				-1.2
1,214,430	-				+0.8
1,214,439	+				+1.6
1,214,439	+				-0.2
1,214,440	-				+1.6
1,214,556	+				-2.4
1,214,556	+				+1.2
1,214,556	+				-3.1
1,214,556	+				-2.6
1,214,556	+				+0.4
1,214,556	+				-0.5
1,214,556	+				-0.5
1,214,557	-				-2.4
1,214,557	-				+0.4
1,214,557	-				-1.6
1,214,563	-				+2.5
1,214,873	+		ABIE40_RS25215	0.34	+1.8
1,214,954	-		ABIE40_RS25215	0.44	-3.6
1,215,120	+		ABIE40_RS25215	0.64	+1.5
1,215,121	-		ABIE40_RS25215	0.64	-0.1
1,215,121	-		ABIE40_RS25215	0.64	+2.7
1,215,275	+		ABIE40_RS25215	0.83	+0.8
1,215,275	+		ABIE40_RS25215	0.83	-2.0
1,215,276	-		ABIE40_RS25215	0.83	+0.3
1,215,276	-		ABIE40_RS25215	0.83	+0.2
1,215,276	-		ABIE40_RS25215	0.83	+0.8
1,215,297	+		ABIE40_RS25215	0.85	+0.7
1,215,298	-		ABIE40_RS25215	0.85	-1.3
1,215,298	-		ABIE40_RS25215	0.85	-0.8
1,215,299	+		ABIE40_RS25215	0.86	+0.8
1,215,523	+				+1.9
1,215,529	-				+0.1
1,215,529	-				-3.1
1,215,529	-				+0.0
1,215,534	+				+0.2
1,215,545	+				-2.4
1,215,545	+				-3.1
1,215,545	+				+0.7
1,215,545	+				-3.8
1,215,545	+				-4.2
1,215,545	+				+0.7
1,215,545	+				-0.7
1,215,546	-				-1.8
1,215,546	-				+1.0
1,215,546	-				-0.9
1,215,546	-				-2.4
1,215,546	-				+2.0
1,215,546	-				+0.5
1,215,546	-				-0.8
1,215,546	-				-3.1
1,215,546	-				+0.8
1,215,546	-				+0.9
1,215,546	-				+3.1
1,215,546	-				+0.6
1,215,588	+				-1.3
1,215,589	-				-2.7
1,215,798	+		ABIE40_RS25220	0.24	-0.2
1,215,798	+		ABIE40_RS25220	0.24	-2.4
1,215,798	+		ABIE40_RS25220	0.24	-2.2
1,215,798	+		ABIE40_RS25220	0.24	+0.8
1,215,799	-		ABIE40_RS25220	0.24	+0.9
1,215,799	-		ABIE40_RS25220	0.24	+0.5
1,215,799	-		ABIE40_RS25220	0.24	-3.0
1,215,800	+		ABIE40_RS25220	0.24	+0.2
1,215,801	-		ABIE40_RS25220	0.24	+0.4
1,215,801	-		ABIE40_RS25220	0.24	+2.1
1,216,046	+		ABIE40_RS25220	0.43	-0.8
1,216,046	+		ABIE40_RS25220	0.43	+0.7
1,216,046	+		ABIE40_RS25220	0.43	-2.4
1,216,046	+		ABIE40_RS25220	0.43	-0.0
1,216,046	+		ABIE40_RS25220	0.43	-2.0
1,216,046	+		ABIE40_RS25220	0.43	-3.3
1,216,046	+		ABIE40_RS25220	0.43	+0.9
1,216,046	+		ABIE40_RS25220	0.43	-2.3
1,216,046	+		ABIE40_RS25220	0.43	+0.4
1,216,046	+		ABIE40_RS25220	0.43	+2.0
1,216,047	-		ABIE40_RS25220	0.43	+0.1
1,216,047	-		ABIE40_RS25220	0.43	+1.9
1,216,047	-		ABIE40_RS25220	0.43	+2.0
1,216,047	-		ABIE40_RS25220	0.43	-4.1
1,216,047	-		ABIE40_RS25220	0.43	+0.2
1,216,047	-		ABIE40_RS25220	0.43	-2.4
1,216,051	-		ABIE40_RS25220	0.43	-0.5
1,216,051	-		ABIE40_RS25220	0.43	-1.2
1,216,056	+		ABIE40_RS25220	0.43	-0.5
1,216,056	+		ABIE40_RS25220	0.43	-0.4
1,216,056	+		ABIE40_RS25220	0.43	+0.5
1,216,056	+		ABIE40_RS25220	0.43	+0.8
1,216,056	+		ABIE40_RS25220	0.43	+1.0
1,216,056	+		ABIE40_RS25220	0.43	+1.4
1,216,057	-		ABIE40_RS25220	0.43	-1.1
1,216,058	+		ABIE40_RS25220	0.43	+1.0
1,216,058	+		ABIE40_RS25220	0.43	+0.7
1,216,058	+		ABIE40_RS25220	0.43	+0.9
1,216,058	+		ABIE40_RS25220	0.43	+1.1
1,216,059	-		ABIE40_RS25220	0.44	-4.0
1,216,059	-		ABIE40_RS25220	0.44	-1.6
1,216,059	-		ABIE40_RS25220	0.44	+1.3
1,216,059	-		ABIE40_RS25220	0.44	-0.7
1,216,133	+		ABIE40_RS25220	0.49	+0.0
1,216,133	+		ABIE40_RS25220	0.49	-0.5
1,216,133	+		ABIE40_RS25220	0.49	-0.3
1,216,133	+		ABIE40_RS25220	0.49	+1.6
1,216,133	+		ABIE40_RS25220	0.49	-1.2
1,216,134	-		ABIE40_RS25220	0.49	-0.3
1,216,134	-		ABIE40_RS25220	0.49	-0.2
1,216,134	-		ABIE40_RS25220	0.49	+2.3
1,216,134	-		ABIE40_RS25220	0.49	-1.6
1,216,134	-		ABIE40_RS25220	0.49	+1.3
1,216,134	-		ABIE40_RS25220	0.49	-0.4
1,216,409	+		ABIE40_RS25220	0.70	+6.4