Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23980 and ABIE40_RS23985 are separated by 0 nucleotides ABIE40_RS23985 and ABIE40_RS23990 are separated by 60 nucleotides
ABIE40_RS23980: ABIE40_RS23980 - cysteine desulfurase-like protein, at 938,043 to 939,302
_RS23980
ABIE40_RS23985: ABIE40_RS23985 - dihydropyrimidinase, at 939,303 to 940,697
_RS23985
ABIE40_RS23990: ABIE40_RS23990 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 940,758 to 941,996
_RS23990
Position (kb) 939
940
941 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 938.481 kb on + strand, within ABIE40_RS23980 at 938.482 kb on - strand, within ABIE40_RS23980 at 938.482 kb on - strand, within ABIE40_RS23980 at 938.644 kb on - strand, within ABIE40_RS23980 at 938.688 kb on + strand, within ABIE40_RS23980 at 938.688 kb on + strand, within ABIE40_RS23980 at 938.691 kb on + strand, within ABIE40_RS23980 at 938.692 kb on - strand, within ABIE40_RS23980 at 938.692 kb on - strand, within ABIE40_RS23980 at 938.692 kb on - strand, within ABIE40_RS23980 at 938.706 kb on + strand, within ABIE40_RS23980 at 938.706 kb on + strand, within ABIE40_RS23980 at 938.707 kb on - strand, within ABIE40_RS23980 at 938.715 kb on + strand, within ABIE40_RS23980 at 938.715 kb on + strand, within ABIE40_RS23980 at 938.715 kb on + strand, within ABIE40_RS23980 at 938.716 kb on - strand, within ABIE40_RS23980 at 938.716 kb on - strand, within ABIE40_RS23980 at 938.728 kb on - strand, within ABIE40_RS23980 at 938.739 kb on + strand, within ABIE40_RS23980 at 938.739 kb on + strand, within ABIE40_RS23980 at 938.748 kb on + strand, within ABIE40_RS23980 at 938.778 kb on + strand, within ABIE40_RS23980 at 938.778 kb on + strand, within ABIE40_RS23980 at 938.779 kb on - strand, within ABIE40_RS23980 at 938.779 kb on - strand, within ABIE40_RS23980 at 938.790 kb on + strand, within ABIE40_RS23980 at 938.838 kb on + strand, within ABIE40_RS23980 at 938.838 kb on + strand, within ABIE40_RS23980 at 938.838 kb on + strand, within ABIE40_RS23980 at 938.838 kb on + strand, within ABIE40_RS23980 at 938.839 kb on - strand, within ABIE40_RS23980 at 938.850 kb on + strand, within ABIE40_RS23980 at 938.850 kb on + strand, within ABIE40_RS23980 at 938.851 kb on - strand, within ABIE40_RS23980 at 938.874 kb on + strand, within ABIE40_RS23980 at 938.874 kb on + strand, within ABIE40_RS23980 at 938.874 kb on + strand, within ABIE40_RS23980 at 938.875 kb on - strand, within ABIE40_RS23980 at 938.875 kb on - strand, within ABIE40_RS23980 at 938.875 kb on - strand, within ABIE40_RS23980 at 938.986 kb on + strand, within ABIE40_RS23980 at 938.987 kb on - strand, within ABIE40_RS23980 at 938.987 kb on - strand, within ABIE40_RS23980 at 938.991 kb on + strand, within ABIE40_RS23980 at 938.991 kb on + strand, within ABIE40_RS23980 at 939.098 kb on + strand, within ABIE40_RS23980 at 939.099 kb on - strand, within ABIE40_RS23980 at 939.099 kb on - strand, within ABIE40_RS23980 at 939.099 kb on - strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.120 kb on + strand, within ABIE40_RS23980 at 939.189 kb on + strand at 939.189 kb on + strand at 939.190 kb on - strand at 939.190 kb on - strand at 939.222 kb on + strand at 939.222 kb on + strand at 939.222 kb on + strand at 939.222 kb on + strand at 939.222 kb on + strand at 939.222 kb on + strand at 939.222 kb on + strand at 939.223 kb on - strand at 939.353 kb on + strand at 939.353 kb on + strand at 939.353 kb on + strand at 939.354 kb on - strand at 939.354 kb on - strand at 939.354 kb on - strand at 939.354 kb on - strand at 939.354 kb on - strand at 939.431 kb on + strand at 939.450 kb on + strand, within ABIE40_RS23985 at 939.450 kb on + strand, within ABIE40_RS23985 at 939.450 kb on + strand, within ABIE40_RS23985 at 939.450 kb on + strand, within ABIE40_RS23985 at 939.450 kb on + strand, within ABIE40_RS23985 at 939.450 kb on + strand, within ABIE40_RS23985 at 939.450 kb on + strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.451 kb on - strand, within ABIE40_RS23985 at 939.630 kb on + strand, within ABIE40_RS23985 at 939.630 kb on + strand, within ABIE40_RS23985 at 939.631 kb on - strand, within ABIE40_RS23985 at 939.657 kb on + strand, within ABIE40_RS23985 at 939.657 kb on + strand, within ABIE40_RS23985 at 939.658 kb on - strand, within ABIE40_RS23985 at 939.658 kb on - strand, within ABIE40_RS23985 at 939.680 kb on - strand, within ABIE40_RS23985 at 939.702 kb on + strand, within ABIE40_RS23985 at 939.702 kb on + strand, within ABIE40_RS23985 at 939.702 kb on + strand, within ABIE40_RS23985 at 939.702 kb on + strand, within ABIE40_RS23985 at 939.703 kb on - strand, within ABIE40_RS23985 at 939.703 kb on - strand, within ABIE40_RS23985 at 939.703 kb on - strand, within ABIE40_RS23985 at 939.744 kb on + strand, within ABIE40_RS23985 at 939.744 kb on + strand, within ABIE40_RS23985 at 939.744 kb on + strand, within ABIE40_RS23985 at 939.745 kb on - strand, within ABIE40_RS23985 at 939.746 kb on + strand, within ABIE40_RS23985 at 939.747 kb on - strand, within ABIE40_RS23985 at 939.747 kb on - strand, within ABIE40_RS23985 at 939.747 kb on - strand, within ABIE40_RS23985 at 939.747 kb on - strand, within ABIE40_RS23985 at 939.771 kb on + strand, within ABIE40_RS23985 at 939.771 kb on + strand, within ABIE40_RS23985 at 939.771 kb on + strand, within ABIE40_RS23985 at 939.771 kb on + strand, within ABIE40_RS23985 at 939.772 kb on - strand, within ABIE40_RS23985 at 939.772 kb on - strand, within ABIE40_RS23985 at 939.772 kb on - strand, within ABIE40_RS23985 at 939.809 kb on + strand, within ABIE40_RS23985 at 939.880 kb on - strand, within ABIE40_RS23985 at 939.880 kb on - strand, within ABIE40_RS23985 at 940.104 kb on + strand, within ABIE40_RS23985 at 940.105 kb on - strand, within ABIE40_RS23985 at 940.105 kb on - strand, within ABIE40_RS23985 at 940.105 kb on - strand, within ABIE40_RS23985 at 940.266 kb on + strand, within ABIE40_RS23985 at 940.443 kb on + strand, within ABIE40_RS23985 at 940.443 kb on + strand, within ABIE40_RS23985 at 940.443 kb on + strand, within ABIE40_RS23985 at 940.452 kb on + strand, within ABIE40_RS23985 at 940.528 kb on + strand, within ABIE40_RS23985 at 940.560 kb on + strand at 940.560 kb on + strand at 940.560 kb on + strand at 940.561 kb on - strand at 940.562 kb on + strand at 940.562 kb on + strand at 940.562 kb on + strand at 940.562 kb on + strand at 940.562 kb on + strand at 940.562 kb on + strand at 940.562 kb on + strand at 940.563 kb on - strand at 940.563 kb on - strand at 940.563 kb on - strand at 940.569 kb on + strand at 940.569 kb on + strand at 940.672 kb on - strand at 940.695 kb on + strand at 940.696 kb on - strand at 940.706 kb on + strand at 940.706 kb on + strand at 940.781 kb on + strand at 940.781 kb on + strand at 940.876 kb on + strand at 940.876 kb on + strand at 940.876 kb on + strand at 940.876 kb on + strand at 940.876 kb on + strand at 940.876 kb on + strand at 940.877 kb on - strand at 940.877 kb on - strand at 940.877 kb on - strand at 940.877 kb on - strand at 940.885 kb on + strand, within ABIE40_RS23990 at 940.886 kb on - strand, within ABIE40_RS23990 at 941.048 kb on + strand, within ABIE40_RS23990 at 941.048 kb on + strand, within ABIE40_RS23990 at 941.049 kb on - strand, within ABIE40_RS23990 at 941.049 kb on - strand, within ABIE40_RS23990 at 941.120 kb on - strand, within ABIE40_RS23990 at 941.120 kb on - strand, within ABIE40_RS23990 at 941.132 kb on + strand, within ABIE40_RS23990 at 941.454 kb on + strand, within ABIE40_RS23990 at 941.454 kb on + strand, within ABIE40_RS23990 at 941.454 kb on + strand, within ABIE40_RS23990 at 941.473 kb on + strand, within ABIE40_RS23990 at 941.474 kb on - strand, within ABIE40_RS23990 at 941.554 kb on + strand, within ABIE40_RS23990 at 941.666 kb on - strand, within ABIE40_RS23990 at 941.676 kb on - strand, within ABIE40_RS23990
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 938,481 + ABIE40_RS23980 0.35 -0.2 938,482 - ABIE40_RS23980 0.35 +1.6 938,482 - ABIE40_RS23980 0.35 +0.3 938,644 - ABIE40_RS23980 0.48 +1.1 938,688 + ABIE40_RS23980 0.51 -1.2 938,688 + ABIE40_RS23980 0.51 +1.7 938,691 + ABIE40_RS23980 0.51 -1.1 938,692 - ABIE40_RS23980 0.52 +0.7 938,692 - ABIE40_RS23980 0.52 -1.3 938,692 - ABIE40_RS23980 0.52 -1.3 938,706 + ABIE40_RS23980 0.53 -0.1 938,706 + ABIE40_RS23980 0.53 -0.7 938,707 - ABIE40_RS23980 0.53 +2.5 938,715 + ABIE40_RS23980 0.53 +0.4 938,715 + ABIE40_RS23980 0.53 -1.4 938,715 + ABIE40_RS23980 0.53 -0.8 938,716 - ABIE40_RS23980 0.53 -0.3 938,716 - ABIE40_RS23980 0.53 -0.4 938,728 - ABIE40_RS23980 0.54 -3.2 938,739 + ABIE40_RS23980 0.55 -1.5 938,739 + ABIE40_RS23980 0.55 -2.6 938,748 + ABIE40_RS23980 0.56 -3.0 938,778 + ABIE40_RS23980 0.58 -0.2 938,778 + ABIE40_RS23980 0.58 -0.5 938,779 - ABIE40_RS23980 0.58 -2.7 938,779 - ABIE40_RS23980 0.58 +0.9 938,790 + ABIE40_RS23980 0.59 -0.1 938,838 + ABIE40_RS23980 0.63 -0.5 938,838 + ABIE40_RS23980 0.63 -0.5 938,838 + ABIE40_RS23980 0.63 +0.4 938,838 + ABIE40_RS23980 0.63 -1.1 938,839 - ABIE40_RS23980 0.63 +1.7 938,850 + ABIE40_RS23980 0.64 -0.1 938,850 + ABIE40_RS23980 0.64 +2.1 938,851 - ABIE40_RS23980 0.64 -0.2 938,874 + ABIE40_RS23980 0.66 +0.1 938,874 + ABIE40_RS23980 0.66 -3.1 938,874 + ABIE40_RS23980 0.66 -4.2 938,875 - ABIE40_RS23980 0.66 -2.6 938,875 - ABIE40_RS23980 0.66 +0.1 938,875 - ABIE40_RS23980 0.66 -0.3 938,986 + ABIE40_RS23980 0.75 -2.2 938,987 - ABIE40_RS23980 0.75 -0.3 938,987 - ABIE40_RS23980 0.75 -0.8 938,991 + ABIE40_RS23980 0.75 -1.2 938,991 + ABIE40_RS23980 0.75 -3.4 939,098 + ABIE40_RS23980 0.84 +0.9 939,099 - ABIE40_RS23980 0.84 +0.3 939,099 - ABIE40_RS23980 0.84 +1.2 939,099 - ABIE40_RS23980 0.84 -0.0 939,120 + ABIE40_RS23980 0.85 -2.8 939,120 + ABIE40_RS23980 0.85 -1.6 939,120 + ABIE40_RS23980 0.85 +0.0 939,120 + ABIE40_RS23980 0.85 -1.1 939,120 + ABIE40_RS23980 0.85 -0.0 939,120 + ABIE40_RS23980 0.85 -0.3 939,120 + ABIE40_RS23980 0.85 +2.5 939,120 + ABIE40_RS23980 0.85 +1.5 939,189 + -2.2 939,189 + -1.8 939,190 - -0.8 939,190 - -0.3 939,222 + +0.6 939,222 + +1.3 939,222 + -4.2 939,222 + -0.2 939,222 + +0.5 939,222 + +0.2 939,222 + +3.2 939,223 - -2.5 939,353 + +0.9 939,353 + +0.4 939,353 + -0.4 939,354 - -2.1 939,354 - +0.4 939,354 - -1.8 939,354 - +0.9 939,354 - -0.1 939,431 + -3.4 939,450 + ABIE40_RS23985 0.11 +0.2 939,450 + ABIE40_RS23985 0.11 +2.2 939,450 + ABIE40_RS23985 0.11 +0.2 939,450 + ABIE40_RS23985 0.11 +0.9 939,450 + ABIE40_RS23985 0.11 -0.1 939,450 + ABIE40_RS23985 0.11 -1.8 939,450 + ABIE40_RS23985 0.11 +0.4 939,451 - ABIE40_RS23985 0.11 +2.0 939,451 - ABIE40_RS23985 0.11 -3.7 939,451 - ABIE40_RS23985 0.11 -3.5 939,451 - ABIE40_RS23985 0.11 +0.5 939,451 - ABIE40_RS23985 0.11 +1.8 939,451 - ABIE40_RS23985 0.11 -2.0 939,451 - ABIE40_RS23985 0.11 +2.3 939,630 + ABIE40_RS23985 0.23 -1.6 939,630 + ABIE40_RS23985 0.23 -3.1 939,631 - ABIE40_RS23985 0.24 -2.2 939,657 + ABIE40_RS23985 0.25 -0.2 939,657 + ABIE40_RS23985 0.25 -0.5 939,658 - ABIE40_RS23985 0.25 -1.2 939,658 - ABIE40_RS23985 0.25 -1.3 939,680 - ABIE40_RS23985 0.27 +0.4 939,702 + ABIE40_RS23985 0.29 -0.9 939,702 + ABIE40_RS23985 0.29 +1.1 939,702 + ABIE40_RS23985 0.29 -1.8 939,702 + ABIE40_RS23985 0.29 -0.7 939,703 - ABIE40_RS23985 0.29 -1.4 939,703 - ABIE40_RS23985 0.29 -1.9 939,703 - ABIE40_RS23985 0.29 -1.5 939,744 + ABIE40_RS23985 0.32 -0.5 939,744 + ABIE40_RS23985 0.32 -3.4 939,744 + ABIE40_RS23985 0.32 +0.7 939,745 - ABIE40_RS23985 0.32 +0.5 939,746 + ABIE40_RS23985 0.32 +0.4 939,747 - ABIE40_RS23985 0.32 +1.3 939,747 - ABIE40_RS23985 0.32 +2.5 939,747 - ABIE40_RS23985 0.32 -0.3 939,747 - ABIE40_RS23985 0.32 +0.2 939,771 + ABIE40_RS23985 0.34 -2.2 939,771 + ABIE40_RS23985 0.34 +0.5 939,771 + ABIE40_RS23985 0.34 -2.3 939,771 + ABIE40_RS23985 0.34 -0.8 939,772 - ABIE40_RS23985 0.34 +0.4 939,772 - ABIE40_RS23985 0.34 -3.0 939,772 - ABIE40_RS23985 0.34 -0.7 939,809 + ABIE40_RS23985 0.36 -3.8 939,880 - ABIE40_RS23985 0.41 +0.5 939,880 - ABIE40_RS23985 0.41 -2.1 940,104 + ABIE40_RS23985 0.57 +1.7 940,105 - ABIE40_RS23985 0.57 -1.9 940,105 - ABIE40_RS23985 0.57 +0.7 940,105 - ABIE40_RS23985 0.57 +0.5 940,266 + ABIE40_RS23985 0.69 -2.4 940,443 + ABIE40_RS23985 0.82 -2.7 940,443 + ABIE40_RS23985 0.82 -2.0 940,443 + ABIE40_RS23985 0.82 -2.7 940,452 + ABIE40_RS23985 0.82 -0.3 940,528 + ABIE40_RS23985 0.88 -0.5 940,560 + -1.5 940,560 + -1.0 940,560 + +0.2 940,561 - +1.2 940,562 + +1.3 940,562 + -0.8 940,562 + -0.8 940,562 + -1.1 940,562 + -0.1 940,562 + +0.2 940,562 + -2.8 940,563 - -1.3 940,563 - -1.3 940,563 - -4.0 940,569 + -1.9 940,569 + -2.3 940,672 - -2.0 940,695 + -0.5 940,696 - +1.9 940,706 + -4.2 940,706 + -2.2 940,781 + +1.5 940,781 + +1.2 940,876 + -0.5 940,876 + -0.5 940,876 + -0.4 940,876 + +0.9 940,876 + +0.5 940,876 + +1.2 940,877 - +0.4 940,877 - +0.8 940,877 - -1.3 940,877 - -4.0 940,885 + ABIE40_RS23990 0.10 -3.3 940,886 - ABIE40_RS23990 0.10 -1.4 941,048 + ABIE40_RS23990 0.23 +1.3 941,048 + ABIE40_RS23990 0.23 +1.4 941,049 - ABIE40_RS23990 0.23 +0.1 941,049 - ABIE40_RS23990 0.23 -2.1 941,120 - ABIE40_RS23990 0.29 -2.8 941,120 - ABIE40_RS23990 0.29 +1.3 941,132 + ABIE40_RS23990 0.30 +1.9 941,454 + ABIE40_RS23990 0.56 -1.0 941,454 + ABIE40_RS23990 0.56 -0.1 941,454 + ABIE40_RS23990 0.56 -2.1 941,473 + ABIE40_RS23990 0.58 -2.6 941,474 - ABIE40_RS23990 0.58 -2.7 941,554 + ABIE40_RS23990 0.64 -1.5 941,666 - ABIE40_RS23990 0.73 -2.0 941,676 - ABIE40_RS23990 0.74 -1.7
Or see this region's nucleotide sequence