Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23545 and ABIE40_RS23550 overlap by 4 nucleotides ABIE40_RS23550 and ABIE40_RS23555 are separated by 153 nucleotides ABIE40_RS23555 and ABIE40_RS23560 are separated by 121 nucleotides
ABIE40_RS23545: ABIE40_RS23545 - M20/M25/M40 family metallo-hydrolase, at 858,396 to 859,652
_RS23545
ABIE40_RS23550: ABIE40_RS23550 - ROK family transcriptional regulator, at 859,649 to 860,863
_RS23550
ABIE40_RS23555: ABIE40_RS23555 - hypothetical protein, at 861,017 to 861,487
_RS23555
ABIE40_RS23560: ABIE40_RS23560 - adenylate/guanylate cyclase domain-containing protein, at 861,609 to 862,790
_RS23560
Position (kb) 859
860
861 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 859.001 kb on - strand, within ABIE40_RS23545 at 859.084 kb on + strand, within ABIE40_RS23545 at 859.085 kb on - strand, within ABIE40_RS23545 at 859.136 kb on - strand, within ABIE40_RS23545 at 859.136 kb on - strand, within ABIE40_RS23545 at 859.489 kb on - strand, within ABIE40_RS23545 at 859.489 kb on - strand, within ABIE40_RS23545 at 859.489 kb on - strand, within ABIE40_RS23545 at 859.497 kb on + strand, within ABIE40_RS23545 at 860.088 kb on + strand, within ABIE40_RS23550 at 860.089 kb on - strand, within ABIE40_RS23550 at 860.231 kb on - strand, within ABIE40_RS23550 at 860.231 kb on - strand, within ABIE40_RS23550 at 860.232 kb on + strand, within ABIE40_RS23550 at 860.232 kb on + strand, within ABIE40_RS23550 at 860.233 kb on - strand, within ABIE40_RS23550 at 860.233 kb on - strand, within ABIE40_RS23550 at 860.233 kb on - strand, within ABIE40_RS23550 at 860.233 kb on - strand, within ABIE40_RS23550 at 860.375 kb on - strand, within ABIE40_RS23550 at 860.649 kb on + strand, within ABIE40_RS23550 at 860.649 kb on + strand, within ABIE40_RS23550 at 860.650 kb on - strand, within ABIE40_RS23550 at 860.650 kb on - strand, within ABIE40_RS23550 at 860.650 kb on - strand, within ABIE40_RS23550 at 860.650 kb on - strand, within ABIE40_RS23550 at 860.855 kb on - strand at 860.938 kb on + strand at 860.996 kb on - strand at 861.015 kb on + strand at 861.015 kb on + strand at 861.015 kb on + strand at 861.016 kb on - strand at 861.016 kb on - strand at 861.016 kb on - strand at 861.026 kb on - strand at 861.162 kb on + strand, within ABIE40_RS23555 at 861.162 kb on + strand, within ABIE40_RS23555 at 861.163 kb on - strand, within ABIE40_RS23555 at 861.163 kb on - strand, within ABIE40_RS23555 at 861.163 kb on - strand, within ABIE40_RS23555 at 861.183 kb on + strand, within ABIE40_RS23555 at 861.184 kb on - strand, within ABIE40_RS23555 at 861.343 kb on + strand, within ABIE40_RS23555 at 861.344 kb on - strand, within ABIE40_RS23555 at 861.344 kb on - strand, within ABIE40_RS23555 at 861.364 kb on - strand, within ABIE40_RS23555 at 861.366 kb on + strand, within ABIE40_RS23555 at 861.366 kb on + strand, within ABIE40_RS23555 at 861.366 kb on + strand, within ABIE40_RS23555 at 861.367 kb on - strand, within ABIE40_RS23555 at 861.372 kb on + strand, within ABIE40_RS23555 at 861.372 kb on + strand, within ABIE40_RS23555 at 861.372 kb on + strand, within ABIE40_RS23555 at 861.373 kb on - strand, within ABIE40_RS23555 at 861.394 kb on + strand, within ABIE40_RS23555 at 861.395 kb on - strand, within ABIE40_RS23555 at 861.473 kb on + strand at 861.474 kb on - strand at 861.514 kb on + strand at 861.514 kb on + strand at 861.514 kb on + strand at 861.514 kb on + strand at 861.514 kb on + strand at 861.515 kb on - strand at 861.532 kb on + strand at 861.532 kb on + strand at 861.574 kb on + strand at 861.574 kb on + strand at 861.575 kb on - strand at 861.582 kb on - strand at 861.641 kb on + strand at 861.668 kb on + strand at 861.669 kb on - strand at 861.805 kb on + strand, within ABIE40_RS23560 at 861.805 kb on + strand, within ABIE40_RS23560
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 859,001 - ABIE40_RS23545 0.48 -2.5 859,084 + ABIE40_RS23545 0.55 -4.4 859,085 - ABIE40_RS23545 0.55 +1.7 859,136 - ABIE40_RS23545 0.59 -0.5 859,136 - ABIE40_RS23545 0.59 -2.5 859,489 - ABIE40_RS23545 0.87 -2.7 859,489 - ABIE40_RS23545 0.87 +1.0 859,489 - ABIE40_RS23545 0.87 -0.1 859,497 + ABIE40_RS23545 0.88 +0.7 860,088 + ABIE40_RS23550 0.36 +0.7 860,089 - ABIE40_RS23550 0.36 -3.1 860,231 - ABIE40_RS23550 0.48 -3.7 860,231 - ABIE40_RS23550 0.48 +0.9 860,232 + ABIE40_RS23550 0.48 -1.9 860,232 + ABIE40_RS23550 0.48 -0.9 860,233 - ABIE40_RS23550 0.48 -3.2 860,233 - ABIE40_RS23550 0.48 -0.2 860,233 - ABIE40_RS23550 0.48 -0.4 860,233 - ABIE40_RS23550 0.48 -2.3 860,375 - ABIE40_RS23550 0.60 +1.3 860,649 + ABIE40_RS23550 0.82 -0.4 860,649 + ABIE40_RS23550 0.82 -2.2 860,650 - ABIE40_RS23550 0.82 -1.8 860,650 - ABIE40_RS23550 0.82 +1.3 860,650 - ABIE40_RS23550 0.82 -0.8 860,650 - ABIE40_RS23550 0.82 +0.1 860,855 - +3.1 860,938 + -1.0 860,996 - +0.8 861,015 + +1.1 861,015 + +0.9 861,015 + -2.3 861,016 - -3.4 861,016 - -0.4 861,016 - +1.3 861,026 - +0.2 861,162 + ABIE40_RS23555 0.31 -1.0 861,162 + ABIE40_RS23555 0.31 +1.4 861,163 - ABIE40_RS23555 0.31 +0.3 861,163 - ABIE40_RS23555 0.31 +0.6 861,163 - ABIE40_RS23555 0.31 +2.4 861,183 + ABIE40_RS23555 0.35 +2.9 861,184 - ABIE40_RS23555 0.35 -3.4 861,343 + ABIE40_RS23555 0.69 -2.1 861,344 - ABIE40_RS23555 0.69 -0.8 861,344 - ABIE40_RS23555 0.69 +1.1 861,364 - ABIE40_RS23555 0.74 +0.0 861,366 + ABIE40_RS23555 0.74 -0.7 861,366 + ABIE40_RS23555 0.74 +0.8 861,366 + ABIE40_RS23555 0.74 -0.4 861,367 - ABIE40_RS23555 0.74 +3.7 861,372 + ABIE40_RS23555 0.75 +1.1 861,372 + ABIE40_RS23555 0.75 -3.8 861,372 + ABIE40_RS23555 0.75 +2.5 861,373 - ABIE40_RS23555 0.76 +0.8 861,394 + ABIE40_RS23555 0.80 -0.6 861,395 - ABIE40_RS23555 0.80 +1.7 861,473 + +3.5 861,474 - +3.5 861,514 + -1.7 861,514 + +1.1 861,514 + +0.3 861,514 + -3.7 861,514 + +0.5 861,515 - +1.2 861,532 + -0.0 861,532 + -3.0 861,574 + +1.9 861,574 + +1.3 861,575 - +1.3 861,582 - -3.1 861,641 + -1.1 861,668 + -0.8 861,669 - -0.1 861,805 + ABIE40_RS23560 0.17 +0.2 861,805 + ABIE40_RS23560 0.17 +0.8
Or see this region's nucleotide sequence