Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21210

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21205 and ABIE40_RS21210 are separated by 101 nucleotidesABIE40_RS21210 and ABIE40_RS21215 are separated by 35 nucleotidesABIE40_RS21215 and ABIE40_RS21220 overlap by 4 nucleotides ABIE40_RS21205: ABIE40_RS21205 - PLP-dependent aminotransferase family protein, at 355,244 to 356,572 _RS21205 ABIE40_RS21210: ABIE40_RS21210 - nitrate ABC transporter substrate-binding protein, at 356,674 to 357,654 _RS21210 ABIE40_RS21215: ABIE40_RS21215 - ABC transporter substrate-binding protein, at 357,690 to 358,574 _RS21215 ABIE40_RS21220: ABIE40_RS21220 - amino acid ABC transporter permease, at 358,571 to 359,527 _RS21220 Position (kb) 356 357 358Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 355.759 kb on + strand, within ABIE40_RS21205at 355.759 kb on + strand, within ABIE40_RS21205at 355.759 kb on + strand, within ABIE40_RS21205at 355.759 kb on + strand, within ABIE40_RS21205at 355.760 kb on - strand, within ABIE40_RS21205at 355.792 kb on + strand, within ABIE40_RS21205at 355.793 kb on - strand, within ABIE40_RS21205at 355.793 kb on - strand, within ABIE40_RS21205at 355.793 kb on - strand, within ABIE40_RS21205at 355.793 kb on - strand, within ABIE40_RS21205at 355.793 kb on - strand, within ABIE40_RS21205at 355.798 kb on + strand, within ABIE40_RS21205at 355.798 kb on + strand, within ABIE40_RS21205at 355.799 kb on - strand, within ABIE40_RS21205at 355.799 kb on - strand, within ABIE40_RS21205at 356.062 kb on + strand, within ABIE40_RS21205at 356.062 kb on + strand, within ABIE40_RS21205at 356.062 kb on + strand, within ABIE40_RS21205at 356.063 kb on - strand, within ABIE40_RS21205at 356.063 kb on - strand, within ABIE40_RS21205at 356.063 kb on - strand, within ABIE40_RS21205at 356.064 kb on + strand, within ABIE40_RS21205at 356.064 kb on + strand, within ABIE40_RS21205at 356.065 kb on - strand, within ABIE40_RS21205at 356.065 kb on - strand, within ABIE40_RS21205at 356.065 kb on - strand, within ABIE40_RS21205at 356.077 kb on - strand, within ABIE40_RS21205at 356.077 kb on - strand, within ABIE40_RS21205at 356.112 kb on + strand, within ABIE40_RS21205at 356.113 kb on - strand, within ABIE40_RS21205at 356.169 kb on + strand, within ABIE40_RS21205at 356.169 kb on + strand, within ABIE40_RS21205at 356.169 kb on + strand, within ABIE40_RS21205at 356.199 kb on + strand, within ABIE40_RS21205at 356.200 kb on - strand, within ABIE40_RS21205at 356.277 kb on + strand, within ABIE40_RS21205at 356.277 kb on + strand, within ABIE40_RS21205at 356.278 kb on - strand, within ABIE40_RS21205at 356.278 kb on - strand, within ABIE40_RS21205at 356.562 kb on - strandat 356.665 kb on + strandat 356.665 kb on + strandat 356.666 kb on - strandat 356.687 kb on + strandat 356.688 kb on - strandat 356.688 kb on - strandat 356.713 kb on + strandat 356.713 kb on + strandat 356.713 kb on + strandat 356.713 kb on + strandat 356.713 kb on - strandat 356.714 kb on - strandat 356.714 kb on - strandat 356.714 kb on - strandat 356.714 kb on - strandat 356.714 kb on - strandat 356.815 kb on + strand, within ABIE40_RS21210at 356.815 kb on + strand, within ABIE40_RS21210at 356.845 kb on + strand, within ABIE40_RS21210at 357.015 kb on + strand, within ABIE40_RS21210at 357.016 kb on - strand, within ABIE40_RS21210at 357.016 kb on - strand, within ABIE40_RS21210at 357.073 kb on + strand, within ABIE40_RS21210at 357.074 kb on - strand, within ABIE40_RS21210at 357.233 kb on - strand, within ABIE40_RS21210at 357.233 kb on - strand, within ABIE40_RS21210at 357.295 kb on + strand, within ABIE40_RS21210at 357.313 kb on + strand, within ABIE40_RS21210at 357.313 kb on + strand, within ABIE40_RS21210at 357.313 kb on + strand, within ABIE40_RS21210at 357.313 kb on + strand, within ABIE40_RS21210at 357.314 kb on - strand, within ABIE40_RS21210at 357.314 kb on - strand, within ABIE40_RS21210at 357.314 kb on - strand, within ABIE40_RS21210at 357.314 kb on - strand, within ABIE40_RS21210at 357.314 kb on - strand, within ABIE40_RS21210at 357.314 kb on - strand, within ABIE40_RS21210at 357.317 kb on + strand, within ABIE40_RS21210at 357.317 kb on + strand, within ABIE40_RS21210at 357.318 kb on - strand, within ABIE40_RS21210at 357.318 kb on - strand, within ABIE40_RS21210at 357.318 kb on - strand, within ABIE40_RS21210at 357.318 kb on - strand, within ABIE40_RS21210at 357.318 kb on - strand, within ABIE40_RS21210at 357.324 kb on + strand, within ABIE40_RS21210at 357.324 kb on + strand, within ABIE40_RS21210at 357.439 kb on + strand, within ABIE40_RS21210at 357.665 kb on + strandat 357.665 kb on + strandat 357.864 kb on + strand, within ABIE40_RS21215at 358.005 kb on + strand, within ABIE40_RS21215at 358.006 kb on - strand, within ABIE40_RS21215at 358.332 kb on + strand, within ABIE40_RS21215at 358.332 kb on + strand, within ABIE40_RS21215at 358.333 kb on - strand, within ABIE40_RS21215at 358.333 kb on - strand, within ABIE40_RS21215at 358.333 kb on - strand, within ABIE40_RS21215at 358.404 kb on + strand, within ABIE40_RS21215at 358.404 kb on + strand, within ABIE40_RS21215at 358.405 kb on - strand, within ABIE40_RS21215at 358.488 kb on + strandat 358.488 kb on + strandat 358.488 kb on + strandat 358.488 kb on + strandat 358.489 kb on - strandat 358.489 kb on - strandat 358.489 kb on - strandat 358.489 kb on - strandat 358.489 kb on - strandat 358.489 kb on - strandat 358.489 kb on - strandat 358.582 kb on + strandat 358.582 kb on + strandat 358.583 kb on - strandat 358.583 kb on - strandat 358.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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355,759 + ABIE40_RS21205 0.39 -2.8
355,759 + ABIE40_RS21205 0.39 -2.2
355,759 + ABIE40_RS21205 0.39 -3.5
355,759 + ABIE40_RS21205 0.39 +1.0
355,760 - ABIE40_RS21205 0.39 -2.6
355,792 + ABIE40_RS21205 0.41 +0.0
355,793 - ABIE40_RS21205 0.41 +0.6
355,793 - ABIE40_RS21205 0.41 +0.5
355,793 - ABIE40_RS21205 0.41 +0.4
355,793 - ABIE40_RS21205 0.41 -0.2
355,793 - ABIE40_RS21205 0.41 -1.4
355,798 + ABIE40_RS21205 0.42 -0.4
355,798 + ABIE40_RS21205 0.42 -1.8
355,799 - ABIE40_RS21205 0.42 +2.9
355,799 - ABIE40_RS21205 0.42 +0.4
356,062 + ABIE40_RS21205 0.62 +0.7
356,062 + ABIE40_RS21205 0.62 -0.2
356,062 + ABIE40_RS21205 0.62 -0.3
356,063 - ABIE40_RS21205 0.62 -1.6
356,063 - ABIE40_RS21205 0.62 +0.3
356,063 - ABIE40_RS21205 0.62 -3.5
356,064 + ABIE40_RS21205 0.62 -0.0
356,064 + ABIE40_RS21205 0.62 -0.9
356,065 - ABIE40_RS21205 0.62 +0.4
356,065 - ABIE40_RS21205 0.62 +0.2
356,065 - ABIE40_RS21205 0.62 +0.9
356,077 - ABIE40_RS21205 0.63 +1.0
356,077 - ABIE40_RS21205 0.63 -1.9
356,112 + ABIE40_RS21205 0.65 -3.2
356,113 - ABIE40_RS21205 0.65 -2.4
356,169 + ABIE40_RS21205 0.70 +0.3
356,169 + ABIE40_RS21205 0.70 +3.3
356,169 + ABIE40_RS21205 0.70 -1.5
356,199 + ABIE40_RS21205 0.72 +0.7
356,200 - ABIE40_RS21205 0.72 -1.0
356,277 + ABIE40_RS21205 0.78 +0.6
356,277 + ABIE40_RS21205 0.78 +0.1
356,278 - ABIE40_RS21205 0.78 -0.8
356,278 - ABIE40_RS21205 0.78 +1.0
356,562 - -1.1
356,665 + -1.8
356,665 + +1.3
356,666 - +0.2
356,687 + +1.9
356,688 - -1.2
356,688 - -3.2
356,713 + +0.1
356,713 + +2.6
356,713 + +0.3
356,713 + -0.5
356,713 - -1.8
356,714 - -0.1
356,714 - +0.6
356,714 - -0.4
356,714 - -1.4
356,714 - +0.0
356,815 + ABIE40_RS21210 0.14 -1.3
356,815 + ABIE40_RS21210 0.14 +0.0
356,845 + ABIE40_RS21210 0.17 -1.0
357,015 + ABIE40_RS21210 0.35 +0.7
357,016 - ABIE40_RS21210 0.35 -2.7
357,016 - ABIE40_RS21210 0.35 -0.5
357,073 + ABIE40_RS21210 0.41 -0.2
357,074 - ABIE40_RS21210 0.41 -0.5
357,233 - ABIE40_RS21210 0.57 -0.6
357,233 - ABIE40_RS21210 0.57 -0.2
357,295 + ABIE40_RS21210 0.63 -1.0
357,313 + ABIE40_RS21210 0.65 -1.5
357,313 + ABIE40_RS21210 0.65 +1.3
357,313 + ABIE40_RS21210 0.65 +1.6
357,313 + ABIE40_RS21210 0.65 +1.6
357,314 - ABIE40_RS21210 0.65 +0.0
357,314 - ABIE40_RS21210 0.65 +0.2
357,314 - ABIE40_RS21210 0.65 -0.1
357,314 - ABIE40_RS21210 0.65 -1.2
357,314 - ABIE40_RS21210 0.65 -0.9
357,314 - ABIE40_RS21210 0.65 +0.9
357,317 + ABIE40_RS21210 0.66 +2.1
357,317 + ABIE40_RS21210 0.66 +1.9
357,318 - ABIE40_RS21210 0.66 -0.2
357,318 - ABIE40_RS21210 0.66 -1.8
357,318 - ABIE40_RS21210 0.66 -1.8
357,318 - ABIE40_RS21210 0.66 +1.6
357,318 - ABIE40_RS21210 0.66 +0.7
357,324 + ABIE40_RS21210 0.66 -2.3
357,324 + ABIE40_RS21210 0.66 -0.2
357,439 + ABIE40_RS21210 0.78 -2.0
357,665 + -3.4
357,665 + +1.0
357,864 + ABIE40_RS21215 0.20 +0.4
358,005 + ABIE40_RS21215 0.36 +0.4
358,006 - ABIE40_RS21215 0.36 -1.2
358,332 + ABIE40_RS21215 0.73 -2.9
358,332 + ABIE40_RS21215 0.73 -0.3
358,333 - ABIE40_RS21215 0.73 -0.2
358,333 - ABIE40_RS21215 0.73 +1.8
358,333 - ABIE40_RS21215 0.73 -2.3
358,404 + ABIE40_RS21215 0.81 +0.9
358,404 + ABIE40_RS21215 0.81 +0.3
358,405 - ABIE40_RS21215 0.81 -0.5
358,488 + -1.2
358,488 + -1.5
358,488 + -3.9
358,488 + +0.3
358,489 - +3.2
358,489 - -3.0
358,489 - +0.0
358,489 - -0.9
358,489 - -1.6
358,489 - +1.8
358,489 - -4.0
358,582 + -0.1
358,582 + +0.5
358,583 - +3.3
358,583 - -1.5
358,583 - -0.3

Or see this region's nucleotide sequence