Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20925 and ABIE40_RS20930 are separated by 42 nucleotides ABIE40_RS20930 and ABIE40_RS20935 are separated by 2 nucleotides ABIE40_RS20935 and ABIE40_RS20940 are separated by 2 nucleotides
ABIE40_RS20925: ABIE40_RS20925 - ABC transporter substrate-binding protein, at 299,045 to 300,301
_RS20925
ABIE40_RS20930: ABIE40_RS20930 - ABC transporter ATP-binding protein, at 300,344 to 301,060
_RS20930
ABIE40_RS20935: ABIE40_RS20935 - ABC transporter ATP-binding protein, at 301,063 to 301,842
_RS20935
ABIE40_RS20940: ABIE40_RS20940 - branched-chain amino acid ABC transporter permease, at 301,845 to 302,765
_RS20940
Position (kb) 300
301
302 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 299.504 kb on + strand, within ABIE40_RS20925 at 299.504 kb on + strand, within ABIE40_RS20925 at 299.504 kb on + strand, within ABIE40_RS20925 at 299.504 kb on + strand, within ABIE40_RS20925 at 299.504 kb on + strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.505 kb on - strand, within ABIE40_RS20925 at 299.606 kb on + strand, within ABIE40_RS20925 at 299.798 kb on + strand, within ABIE40_RS20925 at 299.798 kb on + strand, within ABIE40_RS20925 at 299.798 kb on + strand, within ABIE40_RS20925 at 299.798 kb on + strand, within ABIE40_RS20925 at 299.799 kb on - strand, within ABIE40_RS20925 at 299.799 kb on - strand, within ABIE40_RS20925 at 299.840 kb on + strand, within ABIE40_RS20925 at 299.840 kb on + strand, within ABIE40_RS20925 at 299.936 kb on + strand, within ABIE40_RS20925 at 299.963 kb on + strand, within ABIE40_RS20925 at 299.963 kb on + strand, within ABIE40_RS20925 at 299.964 kb on - strand, within ABIE40_RS20925 at 299.966 kb on - strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.014 kb on + strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.015 kb on - strand, within ABIE40_RS20925 at 300.016 kb on + strand, within ABIE40_RS20925 at 300.016 kb on + strand, within ABIE40_RS20925 at 300.032 kb on + strand, within ABIE40_RS20925 at 300.047 kb on + strand, within ABIE40_RS20925 at 300.048 kb on - strand, within ABIE40_RS20925 at 300.048 kb on - strand, within ABIE40_RS20925 at 300.048 kb on - strand, within ABIE40_RS20925 at 300.048 kb on - strand, within ABIE40_RS20925 at 300.048 kb on - strand, within ABIE40_RS20925 at 300.048 kb on - strand, within ABIE40_RS20925 at 300.134 kb on - strand, within ABIE40_RS20925 at 300.258 kb on - strand at 300.293 kb on + strand at 300.294 kb on - strand at 300.300 kb on - strand at 300.502 kb on + strand, within ABIE40_RS20930 at 300.502 kb on + strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.596 kb on + strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.047 kb on - strand at 301.047 kb on - strand at 301.047 kb on - strand at 301.112 kb on - strand at 301.112 kb on - strand at 301.400 kb on - strand, within ABIE40_RS20935 at 301.419 kb on + strand, within ABIE40_RS20935 at 301.447 kb on + strand, within ABIE40_RS20935 at 301.447 kb on + strand, within ABIE40_RS20935 at 301.447 kb on + strand, within ABIE40_RS20935 at 301.448 kb on - strand, within ABIE40_RS20935 at 301.448 kb on - strand, within ABIE40_RS20935 at 301.616 kb on - strand, within ABIE40_RS20935 at 301.780 kb on + strand at 301.780 kb on + strand at 301.864 kb on - strand at 301.864 kb on - strand at 301.864 kb on - strand at 301.920 kb on + strand at 301.920 kb on + strand at 301.921 kb on - strand at 301.921 kb on - strand at 301.923 kb on + strand at 301.923 kb on + strand at 301.923 kb on + strand at 301.924 kb on - strand at 302.013 kb on + strand, within ABIE40_RS20940 at 302.013 kb on + strand, within ABIE40_RS20940 at 302.013 kb on + strand, within ABIE40_RS20940
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 299,504 + ABIE40_RS20925 0.37 +0.8 299,504 + ABIE40_RS20925 0.37 -3.0 299,504 + ABIE40_RS20925 0.37 -0.6 299,504 + ABIE40_RS20925 0.37 +3.2 299,504 + ABIE40_RS20925 0.37 -4.7 299,505 - ABIE40_RS20925 0.37 -4.2 299,505 - ABIE40_RS20925 0.37 +0.8 299,505 - ABIE40_RS20925 0.37 +1.7 299,505 - ABIE40_RS20925 0.37 -0.5 299,505 - ABIE40_RS20925 0.37 +2.0 299,505 - ABIE40_RS20925 0.37 +1.5 299,505 - ABIE40_RS20925 0.37 +1.0 299,606 + ABIE40_RS20925 0.45 -0.9 299,798 + ABIE40_RS20925 0.60 -0.2 299,798 + ABIE40_RS20925 0.60 +0.3 299,798 + ABIE40_RS20925 0.60 -1.9 299,798 + ABIE40_RS20925 0.60 -1.3 299,799 - ABIE40_RS20925 0.60 +1.7 299,799 - ABIE40_RS20925 0.60 -1.6 299,840 + ABIE40_RS20925 0.63 +0.6 299,840 + ABIE40_RS20925 0.63 -3.7 299,936 + ABIE40_RS20925 0.71 +0.4 299,963 + ABIE40_RS20925 0.73 -0.2 299,963 + ABIE40_RS20925 0.73 +1.5 299,964 - ABIE40_RS20925 0.73 -2.3 299,966 - ABIE40_RS20925 0.73 +0.7 300,014 + ABIE40_RS20925 0.77 +1.8 300,014 + ABIE40_RS20925 0.77 +2.6 300,014 + ABIE40_RS20925 0.77 +0.0 300,014 + ABIE40_RS20925 0.77 -2.9 300,014 + ABIE40_RS20925 0.77 -1.6 300,014 + ABIE40_RS20925 0.77 -0.8 300,014 + ABIE40_RS20925 0.77 -0.3 300,014 + ABIE40_RS20925 0.77 -0.4 300,014 + ABIE40_RS20925 0.77 -0.9 300,014 + ABIE40_RS20925 0.77 -0.6 300,014 + ABIE40_RS20925 0.77 -0.6 300,014 + ABIE40_RS20925 0.77 -1.0 300,014 + ABIE40_RS20925 0.77 -0.9 300,015 - ABIE40_RS20925 0.77 +0.9 300,015 - ABIE40_RS20925 0.77 +0.8 300,015 - ABIE40_RS20925 0.77 +2.6 300,015 - ABIE40_RS20925 0.77 +1.6 300,015 - ABIE40_RS20925 0.77 +2.1 300,015 - ABIE40_RS20925 0.77 +1.2 300,015 - ABIE40_RS20925 0.77 -2.3 300,015 - ABIE40_RS20925 0.77 +0.0 300,015 - ABIE40_RS20925 0.77 +1.1 300,015 - ABIE40_RS20925 0.77 -1.7 300,016 + ABIE40_RS20925 0.77 +0.0 300,016 + ABIE40_RS20925 0.77 -1.2 300,032 + ABIE40_RS20925 0.79 +0.2 300,047 + ABIE40_RS20925 0.80 +1.6 300,048 - ABIE40_RS20925 0.80 +0.3 300,048 - ABIE40_RS20925 0.80 +0.6 300,048 - ABIE40_RS20925 0.80 +0.9 300,048 - ABIE40_RS20925 0.80 +2.6 300,048 - ABIE40_RS20925 0.80 +1.8 300,048 - ABIE40_RS20925 0.80 -2.8 300,134 - ABIE40_RS20925 0.87 +0.4 300,258 - -0.3 300,293 + -0.9 300,294 - +2.4 300,300 - -0.8 300,502 + ABIE40_RS20930 0.22 -2.9 300,502 + ABIE40_RS20930 0.22 -0.7 300,503 - ABIE40_RS20930 0.22 -3.3 300,503 - ABIE40_RS20930 0.22 -0.6 300,503 - ABIE40_RS20930 0.22 +0.1 300,503 - ABIE40_RS20930 0.22 +0.3 300,503 - ABIE40_RS20930 0.22 +0.4 300,503 - ABIE40_RS20930 0.22 +1.4 300,596 + ABIE40_RS20930 0.35 -2.8 300,597 - ABIE40_RS20930 0.35 -0.3 300,597 - ABIE40_RS20930 0.35 +0.3 300,597 - ABIE40_RS20930 0.35 +0.7 300,597 - ABIE40_RS20930 0.35 -1.8 301,046 + +1.8 301,046 + -0.1 301,046 + +1.2 301,046 + +0.2 301,046 + -0.8 301,047 - +0.6 301,047 - -0.3 301,047 - +1.1 301,112 - -0.6 301,112 - -2.3 301,400 - ABIE40_RS20935 0.43 +1.4 301,419 + ABIE40_RS20935 0.46 -3.8 301,447 + ABIE40_RS20935 0.49 +0.6 301,447 + ABIE40_RS20935 0.49 -1.6 301,447 + ABIE40_RS20935 0.49 +1.2 301,448 - ABIE40_RS20935 0.49 -3.2 301,448 - ABIE40_RS20935 0.49 -3.2 301,616 - ABIE40_RS20935 0.71 +4.5 301,780 + -0.8 301,780 + -2.3 301,864 - -1.8 301,864 - -1.0 301,864 - +1.3 301,920 + -2.9 301,920 + -2.2 301,921 - +0.0 301,921 - +0.6 301,923 + -0.5 301,923 + -0.8 301,923 + +0.5 301,924 - +3.0 302,013 + ABIE40_RS20940 0.18 -2.0 302,013 + ABIE40_RS20940 0.18 -2.1 302,013 + ABIE40_RS20940 0.18 -2.3
Or see this region's nucleotide sequence